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[185552_s_at]

Description C16A11.8 /REP_DB=WormBase Gene ID /WP=CE19358 /TR=O76586 /GB=AAK31413.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 40      4grp_total > 17      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 12.3
(-3)
A 		27.1
(-1.2)
A 		28.9
(-1)
A 		61.6
(3)
A 		49
B 9.2
(-3)
A 		37.1
(3)
A 		20
(-0.7)
A 		30.7
(1.6)
P 		28
C 5.6
(-3)
A 		17.4
(-2.1)
A 		7
(-2.9)
A 		84.2
(3)
P 		79
avr 9
(-3) 		27.2
(-0.8) 		18.6
(-1.8) 		58.8
(3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 16.1
(0.1)
A 		14.4
(-0.3)
A 		27.9
(3)
A 		3.7
(-3)
A 		14.4
(-0.3)
A 		22
(1.5)
A 		24
B 28.6
(1)
A 		14.3
(-3)
A 		36
(3)
A 		22.6
(-0.7)
A 		14.2
(-3)
A 		15
(-2.8)
A 		22
C 13.3
(-1.2)
A 		28
(1.5)
A 		3.4
(-3)
A 		35.9
(3)
A 		5.5
(-2.6)
A 		7.8
(-2.2)
A 		33
avr 19.3
(1.3) 		18.9
(1.1) 		22.4
(3) 		20.7
(2.1) 		11.4
(-3) 		14.9
(-1.1) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 4.5
(-3)
A 		5.9
(-1.1)
A 		7.6
(1.1)
A 		9
(3)
A 		5
B 2.9
(-3)
A 		9.2
(3)
A 		4.6
(-1.4)
A 		6.5
(0.4)
P 		6
C 1.9
(-3)
A 		5
(-1.5)
A 		2.4
(-2.8)
A 		14.2
(3)
P 		12
avr 3.1
(-3) 		6.7
(0.2) 		4.9
(-1.4) 		9.9
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 3
(-0.6)
A 		5.1
(1.8)
A 		6.1
(3)
A 		0.9
(-3)
A 		4.4
(1)
A 		5.4
(2.2)
A 		5
B 9.9
(3)
A 		4.8
(-3)
A 		8.7
(1.6)
A 		6
(-1.6)
A 		5.8
(-1.8)
A 		5.6
(-2.1)
A 		5
C 4.9
(0.2)
A 		8.5
(3)
A 		0.9
(-3)
A 		7.2
(2)
A 		1.8
(-2.3)
A 		2.6
(-1.7)
A 		8
avr 5.9
(2.4) 		6.1
(3) 		5.2
(0.4) 		4.7
(-1) 		4
(-3) 		4.5
(-1.6) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185552_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5262
Sequence Type Exemplar sequence
Representative Public ID C16A11.8 NCBI
Target Description C16A11.8 /REP_DB=WormBase Gene ID /WP=CE19358 /TR=O76586 /GB=AAK31413.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062349(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062349 NCBI Caenorhabditis elegans C16A11.8 (C16A11.8) mRNA, complete cds. 11/11 A 
SNAP00000042946 ENSEMBL cdna:SNAP chromosome:CEL140:II:4257086:4258775:-1 11/11 None
GENEFINDER00000042957 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4257086:4258775:-1 9/11 None
C16A11.8 ENSEMBL cdna:known chromosome:CEL140:II:4257086:4258775:-1 gene:C16A11.8 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4257084-4258774(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C16A11.8
Entrez Gene 173760 Entrez gene
SwissProt O76586 EMBL-EBI
WormBase CE19358 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK31413 Hypothetical protein C16A11.8 [Caenorhabditis elegans] ref|NP_494750.1| C16A11.8 [Caenorhabditis elegans] 1.0E-119
blast AAK31413 Hypothetical protein C16A11.8 [Caenorhabditis elegans] ref|NP_494750.1| C16A11.8 [Caenorhabditis elegans] 1.0E-116
blast CAE74256 Hypothetical protein CBG21945 [Caenorhabditis briggsae] 1.0E-101
blast CAE74256 Hypothetical protein CBG21945 [Caenorhabditis briggsae] 1.0E-97
blast NP_498491 R13F6.8 [Caenorhabditis elegans] gb|AAC47048.1| Hypothetical protein R13F6.8 [Caenorhabditis elegans] sp|Q21984|YNQ8_CAEEL Hypothetical protein R13F6.8 in chromosome III precursor 8.0E-18
blast NP_498491 R13F6.8 [Caenorhabditis elegans] gb|AAC47048.1| Hypothetical protein R13F6.8 [Caenorhabditis elegans] sp|Q21984|YNQ8_CAEEL Hypothetical protein R13F6.8 in chromosome III precursor 6.0E-17
Sequence
Target Sequence 
>C. ELEGANS:185552_S_AT
ctgctccgtgcaatgataagaccaaagttttcgatatcactgatccaagaactgacccaa
aatacgcatggactcaatggtacagaactgctccgtcatgggcatattggccacttcgtg
ccgaggaatacagtacatattgtgacatggctgttcctccatactctttcgagaaggaac
tctcaactaattatggatat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGCTCCGTGCAATGATAAGACCAA 272 237 431 Antisense
ATAAGACCAAAGTTTTCGATATCAC 262 23 446 Antisense
AATACGCATGGACTCAATGGTACAG 225 171 491 Antisense
AATGGTACAGAACTGCTCCGTCATG 347 163 506 Antisense
GAACTGCTCCGTCATGGGCATATTG 395 349 515 Antisense
CCACTTCGTGCCGAGGAATACAGTA 705 273 541 Antisense
TCGTGCCGAGGAATACAGTACATAT 667 603 546 Antisense
CATATTGTGACATGGCTGTTCCTCC 214 215 566 Antisense
TTGTGACATGGCTGTTCCTCCATAC 50 709 570 Antisense
CTTTCGAGAAGGAACTCTCAACTAA 58 221 596 Antisense
GGAACTCTCAACTAATTATGGATAT 311 529 606 Antisense
Sequence Source Affymetrix Proprietary Database