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[185551_at]

Description C16A11.8 /REP_DB=WormBase Gene ID /WP=CE19358 /TR=O76586 /GB=AAK31413.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 43      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 109
1 2 3 4 range
A 78.2
(-3)
A 		135.8
(3)
A 		135.3
(2.9)
A 		101.4
(-0.6)
P 		58
B 125.3
(1.7)
A 		141
(3)
A 		74.7
(-2.4)
A 		66.9
(-3)
A 		74
C 102.3
(-0.3)
A 		161.7
(3)
A 		61.5
(-2.5)
A 		52.5
(-3)
A 		109
avr 101.9
(-0.7) 		146.2
(3) 		90.5
(-1.6) 		73.6
(-3) 		73

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 115
1 2 3 4 5 6 range
A 82.8
(1.4)
A 		83.9
(1.5)
A 		94.6
(3)
A 		50.4
(-3)
A 		93.3
(2.8)
A 		51.5
(-2.9)
A 		44
B 68
(-0.3)
A 		83.1
(1.8)
A 		82.6
(1.8)
A 		49.3
(-3)
A 		91.2
(3)
A 		51.6
(-2.7)
A 		42
C 25.4
(-2.6)
A 		133.4
(3)
A 		18.7
(-3)
A 		38
(-2)
A 		84.4
(0.4)
A 		72.8
(-0.2)
A 		115
avr 58.7
(-1.6) 		100.1
(3) 		65.3
(-0.9) 		45.9
(-3) 		89.6
(1.8) 		58.6
(-1.6) 		54
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 28.5
(1)
A 		29.5
(1.3)
A 		35.4
(3)
A 		14.8
(-3)
P 		21
B 40
(3)
A 		34.8
(1.8)
A 		17.3
(-2.3)
A 		14.3
(-3)
A 		26
C 33.9
(1)
A 		46.5
(3)
A 		21.5
(-1)
A 		8.8
(-3)
A 		38
avr 34.1
(2.3) 		36.9
(3) 		24.7
(-0) 		12.6
(-3) 		24

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 15.3
(-2)
A 		29.8
(3)
A 		20.6
(-0.2)
A 		12.8
(-2.9)
A 		28.2
(2.4)
A 		12.5
(-3)
A 		17
B 23.7
(-0.4)
A 		27.7
(0.7)
A 		20.1
(-1.3)
A 		13.1
(-3)
A 		37.1
(3)
A 		19.2
(-1.5)
A 		24
C 9.4
(-2.2)
A 		40.7
(3)
A 		4.8
(-3)
A 		7.7
(-2.5)
A 		27.3
(0.8)
A 		24.4
(0.3)
A 		36
avr 16.1
(-1.6) 		32.7
(3) 		15.2
(-1.9) 		11.2
(-3) 		30.9
(2.5) 		18.7
(-0.9) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185551_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5262
Sequence Type Exemplar sequence
Representative Public ID C16A11.8 NCBI
Target Description C16A11.8 /REP_DB=WormBase Gene ID /WP=CE19358 /TR=O76586 /GB=AAK31413.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062349(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062349 NCBI Caenorhabditis elegans C16A11.8 (C16A11.8) mRNA, complete cds. 11/11 A 
SNAP00000042946 ENSEMBL cdna:SNAP chromosome:CEL140:II:4257086:4258775:-1 11/11 None
GENEFINDER00000042957 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4257086:4258775:-1 11/11 None
C16A11.8 ENSEMBL cdna:known chromosome:CEL140:II:4257086:4258775:-1 gene:C16A11.8 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4257084-4258774(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C16A11.8
Entrez Gene 173760 Entrez gene
SwissProt O76586 EMBL-EBI
WormBase CE19358 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK31413 Hypothetical protein C16A11.8 [Caenorhabditis elegans] ref|NP_494750.1| C16A11.8 [Caenorhabditis elegans] 1.0E-119
blast AAK31413 Hypothetical protein C16A11.8 [Caenorhabditis elegans] ref|NP_494750.1| C16A11.8 [Caenorhabditis elegans] 1.0E-116
blast CAE74256 Hypothetical protein CBG21945 [Caenorhabditis briggsae] 1.0E-101
blast CAE74256 Hypothetical protein CBG21945 [Caenorhabditis briggsae] 1.0E-97
blast NP_498491 R13F6.8 [Caenorhabditis elegans] gb|AAC47048.1| Hypothetical protein R13F6.8 [Caenorhabditis elegans] sp|Q21984|YNQ8_CAEEL Hypothetical protein R13F6.8 in chromosome III precursor 8.0E-18
blast NP_498491 R13F6.8 [Caenorhabditis elegans] gb|AAC47048.1| Hypothetical protein R13F6.8 [Caenorhabditis elegans] sp|Q21984|YNQ8_CAEEL Hypothetical protein R13F6.8 in chromosome III precursor 6.0E-17
Sequence
Target Sequence 
>C. ELEGANS:185551_AT
gttcttctctgtttttgcattgtcaatgtaaaagctgtatttaatattgataatgatgaa
tcctgcgagtccgaggagcaagagaagcagaaagtcaagtgcccaaagcattacaaggga
tacttccgtgctccaactgctaccaacaatatgacaaagatgtggtgtctccgtgtggtt
actgtaaatgtttcagtgtcagaagcggctgctcaggaagcttgtaatagagaaggatcc
gtgctctctacttttgcctgttatgatgagcagaagcatatcgttagacacgcatcaaaa
tatttccgccgcaacaacatcactcaaggagccatctggcttgacggtgttcgaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCTTCTCTGTTTTTGCATTGTCA 150 445 37 Antisense
TAATGATGAATCCTGCGAGTCCGAG 298 637 87 Antisense
TACAAGGGATACTTCCGTGCTCCAA 259 641 148 Antisense
TGCTCCAACTGCTACCAACAATATG 151 583 165 Antisense
AAAGATGTGGTGTCTCCGTGTGGTT 452 121 192 Antisense
GTCAGAAGCGGCTGCTCAGGAAGCT 515 465 234 Antisense
AGAGAAGGATCCGTGCTCTCTACTT 584 69 265 Antisense
CTCTCTACTTTTGCCTGTTATGATG 310 231 280 Antisense
AAATATTTCCGCCGCAACAACATCA 451 115 334 Antisense
ACATCACTCAAGGAGCCATCTGGCT 522 105 353 Antisense
CCATCTGGCTTGACGGTGTTCGAAT 52 271 368 Antisense
Sequence Source Affymetrix Proprietary Database