[Home] | [Total List]

[185550_at]

Description T06A10.3 /REP_DB=WormBase Gene ID /WP=CE19560 /TR=Q9TZ45 /GB=AAK39272.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 79      6grp_high1_10_10 > 98      4grp_highest_8_8 > 21      4grp_high_8_8 > 15      6grp_highest_nonorm > 95      6grp_total > 96      4grp_total > 0      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 952
1 2 3 4 range
A 286.5
(-3)
P 		354.9
(-1.5)
P 		450.1
(0.6)
P 		556.3
(3)
P 		270
B 406.9
(-2)
P 		339
(-3)
P 		587.7
(0.8)
P 		733.9
(3)
P 		395
C 411.6
(-2.4)
P 		327.5
(-3)
P 		388.2
(-2.6)
P 		1238.4
(3)
P 		911
avr 368.3
(-2.7) 		340.5
(-3) 		475.3
(-1.4) 		842.9
(3) 		502

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 983
1 2 3 4 5 6 range
A 281.7
(-3)
P 		380.9
(-2)
P 		564.7
(-0)
P 		511.2
(-0.6)
P 		818.1
(2.7)
P 		849.5
(3)
P 		568
B 350.1
(-3)
P 		475.1
(-2.2)
P 		773.3
(-0.2)
P 		580.4
(-1.5)
P 		1252.4
(3)
P 		1047.3
(1.6)
P 		902
C 286.5
(-3)
P 		367.7
(-2.5)
P 		405.8
(-2.3)
P 		728.1
(-0.3)
P 		612.1
(-1)
P 		1265
(3)
P 		979
avr 306.1
(-3) 		407.9
(-2.2) 		581.3
(-0.8) 		606.6
(-0.6) 		894.2
(1.7) 		1053.9
(3) 		748
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 132
1 2 3 4 range
A 104.3
(1)
P 		77
(-3)
P 		117.7
(3)
P 		81.4
(-2.4)
P 		41
B 129.8
(0.8)
P 		83.7
(-3)
P 		136.2
(1.3)
P 		156.4
(3)
P 		73
C 136.3
(-0.8)
P 		94.2
(-3)
P 		135.3
(-0.8)
P 		208.8
(3)
P 		115
avr 123.5
(0.6) 		85
(-3) 		129.7
(1.2) 		148.9
(3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 457
1 2 3 4 5 6 range
A 51.9
(-3)
P 		135.5
(-0.4)
P 		123
(-0.8)
P 		129.7
(-0.6)
P 		246.9
(3)
P 		206.8
(1.8)
P 		195
B 121.8
(-3)
P 		158.2
(-2.4)
P 		187.8
(-2)
P 		153.7
(-2.5)
P 		508.8
(3)
P 		390.5
(1.2)
P 		387
C 106.2
(-2.9)
P 		112.2
(-2.8)
P 		103.3
(-3)
P 		146.4
(-2.2)
P 		198.1
(-1.2)
P 		423.5
(3)
P 		320
avr 93.3
(-3) 		135.3
(-2) 		138
(-1.9) 		143.3
(-1.8) 		317.9
(2.5) 		340.3
(3) 		247
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185550_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9747
Sequence Type Exemplar sequence
Representative Public ID T06A10.3 NCBI
Target Description T06A10.3 /REP_DB=WormBase Gene ID /WP=CE19560 /TR=Q9TZ45 /GB=AAK39272.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070599(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070599 NCBI Caenorhabditis elegans T06A10.3 (T06A10.3) mRNA, complete cds. 11/11 None
SNAP00000020715 ENSEMBL cdna:SNAP chromosome:CEL140:IV:16865799:16866419:1 11/11 None
GENEFINDER00000020720 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:16865799:16867081:1 11/11 None
T06A10.3 ENSEMBL cdna:known chromosome:CEL140:IV:16865799:16866419:1 gene:T06A10.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:16865804-16866425(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T06A10.3
Entrez Gene 178471 Entrez gene
SwissProt Q965G7 EMBL-EBI
WormBase CE19560 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK73893 Hypothetical protein T06A10.3 [Caenorhabditis elegans] ref|NP_503000.1| T06A10.3 [Caenorhabditis elegans] 3.0E-82
blast AAK73893 Hypothetical protein T06A10.3 [Caenorhabditis elegans] ref|NP_503000.1| T06A10.3 [Caenorhabditis elegans] 1.0E-81
blast CAE68061 Hypothetical protein CBG13683 [Caenorhabditis briggsae] 6.0E-32
blast CAE68061 Hypothetical protein CBG13683 [Caenorhabditis briggsae] 9.0E-32
Protein Domains
Database ID Description E-Value
Pfam IPR007917 EMBL-EBI Protein of unknown function UPF0224 1.3E-5
Sequence
Target Sequence 
>C. ELEGANS:185550_AT
tggcgtcgggagaatcggaggcccctgggacttcaaaaaatgatcgattttcgataacat
gcccttacaattcggatcacaaggtgtcaatggaggagttcaacacgcacttgtggaagt
gtcgcacggaaaaattgcatttttacccgcattcgttgaaattgaagagatgctcctaca
acatgcgtcacttccttcccgaagaagagctccaattccacgagatcttctgcaaacgtc
aatccgccgatcttcgacgccaattgtcactggagccgctggagctgaacgtggcggagc
acctggcggcacagaagcttcggaaagagtacgagaaggacgaggagtcgctagatggat
cagatgactcggatgaagacgaggaggagaagaatctgtcggtgacgtcggaaatcgaga
aatcggatgtggaagaggtggagatgatgctcgagacgatcaatcggcttgcttactt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGCGTCGGGAGAATCGGAGGCCCC 653 541 14 Antisense
GAGGCCCCTGGGACTTCAAAAAATG 612 385 31 Antisense
AACATGCCCTTACAATTCGGATCAC 585 133 69 Antisense
GGAGGAGTTCAACACGCACTTGTGG 83 517 105 Antisense
AATTGCATTTTTACCCGCATTCGTT 642 177 146 Antisense
GTCACTTCCTTCCCGAAGAAGAGCT 495 463 200 Antisense
AGATCTTCTGCAAACGTCAATCCGC 213 65 236 Antisense
TCGACGCCAATTGTCACTGGAGCCG 141 601 267 Antisense
TGGAGCCGCTGGAGCTGAACGTGGC 641 547 284 Antisense
CTGGCGGCACAGAAGCTTCGGAAAG 602 241 316 Antisense
AGACGATCAATCGGCTTGCTTACTT 446 71 467 Antisense
Sequence Source Affymetrix Proprietary Database