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[185547_at]

Description C01B12.7 /REP_DB=WormBase Gene ID /WP=CE07795 /TR=O17211 /GB=AAB70973.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 23      6grp_high1_10_10 > 21      4grp_highest_8_8 > 25      4grp_high_8_8 > 60      6grp_highest_nonorm > 41      6grp_total > 32      4grp_total > 60      6grp_highest_sub > 01_02_03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 852
1 2 3 4 range
A 812.4
(2)
P 		803.4
(1.9)
P 		918.1
(3)
P 		311.8
(-3)
P 		606
B 872.6
(1.5)
P 		903.9
(1.8)
P 		1063.9
(3)
P 		281
(-3)
P 		783
C 882.4
(2.1)
P 		885.1
(2.1)
P 		999.2
(3)
P 		211.6
(-3)
P 		788
avr 855.8
(1.9) 		864.1
(1.9) 		993.7
(3) 		268.1
(-3) 		726

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 541
1 2 3 4 5 6 range
A 827.8
(1.1)
P 		791.2
(0.7)
P 		979.6
(3)
P 		672
(-0.8)
P 		538.2
(-2.4)
P 		492.8
(-3)
P 		487
B 929.2
(2.8)
P 		945.5
(3)
P 		906.5
(2.5)
P 		808.1
(1.4)
P 		541.1
(-1.8)
P 		438.9
(-3)
P 		507
C 693.1
(0.4)
P 		855.1
(3)
P 		797.1
(2.1)
P 		774.9
(1.7)
P 		479
(-2.9)
P 		474.3
(-3)
P 		381
avr 816.7
(1.9) 		863.9
(2.6) 		894.4
(3) 		751.7
(1) 		519.4
(-2.3) 		468.7
(-3) 		426
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 313
1 2 3 4 range
A 295.8
(3)
P 		174.4
(0.1)
P 		240
(1.7)
P 		45.6
(-3)
P 		250
B 278.3
(3)
P 		223.2
(1.5)
P 		246.5
(2.1)
P 		59.9
(-3)
P 		218
C 292.1
(1.9)
P 		254.5
(1.2)
P 		348.3
(3)
P 		35.7
(-3)
P 		313
avr 288.7
(3) 		217.4
(1.2) 		278.3
(2.7) 		47.1
(-3) 		242

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 203
1 2 3 4 5 6 range
A 152.6
(-1.8)
P 		281.4
(3)
P 		213.3
(0.5)
P 		170.4
(-1.1)
P 		162.4
(-1.4)
P 		120
(-3)
P 		161
B 323.3
(3)
P 		314.7
(2.7)
P 		220.1
(-0.9)
P 		214
(-1.1)
P 		219.8
(-0.9)
P 		163.7
(-3)
P 		160
C 256.9
(2.8)
P 		260.9
(3)
P 		202.9
(-0.3)
P 		155.8
(-3)
P 		155
(-3)
P 		158.8
(-2.8)
P 		106
avr 244.3
(1.2) 		285.7
(3) 		212.1
(-0.2) 		180.1
(-1.6) 		179.1
(-1.6) 		147.5
(-3) 		138
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185547_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5115
Sequence Type Exemplar sequence
Representative Public ID C01B12.7 NCBI
Target Description C01B12.7 /REP_DB=WormBase Gene ID /WP=CE07795 /TR=O17211 /GB=AAB70973.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061236(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061236 NCBI Caenorhabditis elegans C01B12.7 (C01B12.7) mRNA, complete cds. 11/11 None
SNAP00000043180 ENSEMBL cdna:SNAP chromosome:CEL140:II:25517:27012:-1 11/11 None
GENEFINDER00000043186 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:25517:27012:-1 11/11 None
C01B12.7 ENSEMBL cdna:known chromosome:CEL140:II:25517:26961:-1 gene:C01B12.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:25516-26961(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C01B12.7
Entrez Gene 182064 Entrez gene
SwissProt O17211 EMBL-EBI
WormBase CE07795 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB70973 Hypothetical protein C01B12.7 [Caenorhabditis elegans] ref|NP_493637.1| C01B12.7 [Caenorhabditis elegans] 1.0E-74
blast CAE62833 Hypothetical protein CBG07012 [Caenorhabditis briggsae] 1.0E-73
blast CAE62833 Hypothetical protein CBG07012 [Caenorhabditis briggsae] 2.0E-73
Sequence
Target Sequence 
>C. ELEGANS:185547_AT
agagtgccctaggaagtcttcaacaagttggatacggctcagtaattgccaaaatccgat
tagccttcaacgcaactggatcagttttaagaaaacgagtactaaaagaagaacaaattg
aagagaccgtagccaaggagctggaggagcgtcgtcgtacctgggatgttaataatggcc
aatttgacaagtttagccagtggtacatagaatataggaaaaatttgtggcataaagacg
actatctgccatggcttctttatgaaaatgaaatttcttgcttgaaattgacgtttgacg
tttgtgaacgaccaccacgaagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAGTGCCCTAGGAAGTCTTCAACA 280 67 47 Antisense
TCAACAAGTTGGATACGGCTCAGTA 559 629 66 Antisense
ACGGCTCAGTAATTGCCAAAATCCG 653 95 80 Antisense
CCAAAATCCGATTAGCCTTCAACGC 690 275 95 Antisense
TAGCCTTCAACGCAACTGGATCAGT 563 649 107 Antisense
GAGACCGTAGCCAAGGAGCTGGAGG 362 393 169 Antisense
GCGTCGTCGTACCTGGGATGTTAAT 286 253 195 Antisense
TTTGACAAGTTTAGCCAGTGGTACA 345 667 229 Antisense
AAAGACGACTATCTGCCATGGCTTC 378 123 280 Antisense
GACTATCTGCCATGGCTTCTTTATG 153 373 286 Antisense
GTTTGTGAACGACCACCACGAAGAA 458 451 346 Antisense
Sequence Source Affymetrix Proprietary Database