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[185546_at] 7TM chemoreceptor, sre family

Description C50E10.3 /REP_DB=WormBase Gene ID /WP=CE19757 /TR=Q9TZJ5 /GB=AAC67435.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 60      4grp_total > 21      6grp_cgc > 94      6grp_cgc_sub > 04      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 140
1 2 3 4 range
A 97.3
(1)
A 		72.6
(-0.2)
A 		13.2
(-3)
A 		139.9
(3)
A 		127
B 97.7
(2.7)
A 		30.9
(-2)
A 		17.4
(-3)
A 		102.1
(3)
A 		85
C 84.8
(0.1)
A 		115.5
(1.4)
A 		12.6
(-3)
A 		152.7
(3)
A 		140
avr 93.3
(1) 		73
(0) 		14.4
(-3) 		131.6
(3) 		117

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 95
1 2 3 4 5 6 range
A 108.4
(3)
A 		81.6
(0.4)
A 		98.6
(2.1)
A 		84.1
(0.7)
A 		45.7
(-3)
A 		52.3
(-2.4)
A 		63
B 79.5
(3)
A 		35.4
(-3)
A 		46.3
(-1.5)
A 		70.4
(1.8)
A 		58.3
(0.1)
A 		54.4
(-0.4)
A 		44
C 13
(-3)
A 		83.8
(1.6)
A 		53.5
(-0.4)
A 		106
(3)
A 		55.4
(-0.3)
A 		24.9
(-2.2)
A 		93
avr 67
(0.2) 		66.9
(0.2) 		66.1
(0.1) 		86.8
(3) 		53.1
(-1.7) 		43.9
(-3) 		43
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 35.4
(3)
A 		15.8
(-0.7)
A 		3.5
(-3)
A 		20.5
(0.2)
A 		32
B 31.2
(3)
A 		7.6
(-2.2)
A 		4
(-3)
A 		21.8
(0.9)
A 		27
C 28.1
(1.9)
A 		33.2
(3)
A 		4.4
(-3)
A 		25.7
(1.4)
A 		29
avr 31.6
(3) 		18.9
(0.2) 		4
(-3) 		22.7
(1.1) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 20
(-0.3)
A 		29
(3)
A 		21.5
(0.2)
A 		21.3
(0.2)
A 		13.8
(-2.6)
A 		12.7
(-3)
A 		16
B 27.7
(3)
A 		11.8
(-2.8)
A 		11.2
(-3)
A 		18.6
(-0.3)
A 		23.7
(1.5)
A 		20.3
(0.3)
A 		17
C 4.8
(-3)
A 		25.6
(3)
A 		13.6
(-0.5)
A 		21.3
(1.8)
A 		17.9
(0.8)
A 		8.3
(-2)
A 		21
avr 17.5
(-0.3) 		22.1
(3) 		15.4
(-1.8) 		20.4
(1.8) 		18.5
(0.4) 		13.8
(-3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185546_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2626
Sequence Type Exemplar sequence
Representative Public ID C50E10.3 NCBI
Target Description C50E10.3 /REP_DB=WormBase Gene ID /WP=CE19757 /TR=Q9TZJ5 /GB=AAC67435.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064215(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064215 NCBI Caenorhabditis elegans Serpentine Receptor, class E (epsilon) family member (sre-53) (sre-53) mRNA, complete cds. 11/11 None
C50E10.3 ENSEMBL cdna:known chromosome:CEL140:II:12321096:12323308:-1 gene:C50E10.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000034848 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12321078-12323305(-) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sre family
Gene Symbol sre-53
Ensembl C50E10.3
Entrez Gene 183665 Entrez gene
SwissProt Q965H8 EMBL-EBI
WormBase CE38056 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7606 sensory perception of chemical stimulus inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4888 transmembrane receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_496616 Serpentine Receptor, class E (epsilon) family member (sre-53) [Caenorhabditis elegans] gb|AAK73862.2| Serpentine receptor, class e (epsilon) protein 53 [Caenorhabditis elegans] 0.0
blast NP_496617 Serpentine Receptor, class E (epsilon) family member (sre-56) [Caenorhabditis elegans] gb|AAK73867.1| Serpentine receptor, class e (epsilon) protein 56 [Caenorhabditis elegans] 6.0E-92
blast NP_496618 Serpentine Receptor, class E (epsilon) family member (sre-55) [Caenorhabditis elegans] gb|AAK73866.2| Serpentine receptor, class e (epsilon) protein 55 [Caenorhabditis elegans] 6.0E-86
Protein Domains
Database ID Description E-Value
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 2.1E-50
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496616.2 7 33-55,68-90,123-145,166-188,193-212,257-279,294-313
C50E10.3 7 33-55,68-90,123-145,166-188,193-212,257-279,294-313
Sequence
Target Sequence 
>C. ELEGANS:185546_AT
tctatgggtcattgcctcgtggtattttggttggcggagttgccacgtggtattatatga
ttcttatgtcaacttgtttatttatactgtcattggagcgcactttcgcatcgattttta
tcaaaaactatgagaatactcggaggctttatctactatttctaattattttgtttcaac
aatttatggtcctgagcattgtctacctgctcacatataacttgatgaaattcataaatg
ttctcatattcctaattgctatgaatttcctcccgatgctcatttttcttggaaatcggt
ggtttaacttgaaaattgtcaacgagtttttggagagacccgaggaggctaaacccccta
gtcatctgcccggtgctcattctctctgtgagcacttggagcaagtccctgctctccacc
cggcttccattgctccacaagctaacaagaatcgcccttcaacagccacaattaaccaaa
aatgctcctactcaacagcaggagaccgatacgtatttctcacagct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTATGGGTCATTGCCTCGTGGTAT 34 615 359 Antisense
TATACTGTCATTGGAGCGCACTTTC 107 661 441 Antisense
GCGCACTTTCGCATCGATTTTTATC 201 289 456 Antisense
ACTCGGAGGCTTTATCTACTATTTC 683 97 496 Antisense
TATGGTCCTGAGCATTGTCTACCTG 453 655 543 Antisense
GTCTACCTGCTCACATATAACTTGA 490 469 559 Antisense
TAATTGCTATGAATTTCCTCCCGAT 99 635 611 Antisense
GCTTCCATTGCTCCACAAGCTAACA 616 305 781 Antisense
AGCTAACAAGAATCGCCCTTCAACA 198 77 798 Antisense
CCCTTCAACAGCCACAATTAACCAA 189 259 813 Antisense
AGACCGATACGTATTTCTCACAGCT 284 71 861 Antisense
Sequence Source Affymetrix Proprietary Database