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[185545_at]

Description F19B10.5 /REP_DB=WormBase Gene ID /WP=CE09472 /TR=O02067 /GB=AAB52925.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 26      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 140
1 2 3 4 range
A 46.7
(1.2)
A 		63.3
(3)
A 		8.2
(-3)
A 		36.7
(0.1)
A 		55
B 54
(-3)
A 		60.4
(-2.3)
A 		105.6
(3)
A 		67.1
(-1.5)
A 		52
C 56.2
(-3)
A 		97.8
(-0.3)
A 		60.6
(-2.7)
A 		148.5
(3)
A 		92
avr 52.3
(-3) 		73.8
(1.1) 		58.1
(-1.9) 		84.1
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 103
1 2 3 4 5 6 range
A 17.5
(-3)
A 		51.2
(-1)
A 		85.3
(1)
A 		63.9
(-0.3)
A 		120.2
(3)
A 		74.7
(0.3)
A 		103
B 89.7
(2.1)
A 		68
(0.4)
A 		24.4
(-3)
A 		101.5
(3)
A 		84
(1.6)
A 		68
(0.4)
A 		77
C 81.3
(0.4)
A 		78.8
(0.1)
A 		53.4
(-3)
A 		102.4
(3)
A 		86.8
(1.1)
A 		82.7
(0.6)
A 		49
avr 62.8
(-1.8) 		66
(-1.4) 		54.4
(-3) 		89.3
(1.9) 		97
(3) 		75.1
(-0.1) 		43
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 17
(3)
A 		13.7
(1.7)
A 		2.1
(-3)
A 		5.4
(-1.7)
A 		15
B 17.2
(-1.3)
A 		14.9
(-2.6)
A 		24.5
(3)
A 		14.3
(-3)
A 		10
C 18.6
(-3)
A 		28.1
(3)
A 		21.1
(-1.4)
A 		25
(1)
A 		10
avr 17.6
(1.1) 		18.9
(3) 		15.9
(-1.5) 		14.9
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 3.2
(-3)
A 		18.2
(-0.3)
A 		18.6
(-0.2)
A 		16.2
(-0.6)
A 		36.3
(3)
A 		18.2
(-0.3)
A 		33
B 31.2
(2.4)
A 		22.6
(0.6)
A 		5.9
(-3)
A 		26.9
(1.5)
A 		34.1
(3)
A 		25.4
(1.1)
A 		28
C 30.1
(3)
A 		24
(0.8)
A 		13.6
(-3)
A 		20.6
(-0.5)
A 		28.1
(2.3)
A 		27.7
(2.1)
A 		17
avr 21.5
(-0.4) 		21.6
(-0.3) 		12.7
(-3) 		21.2
(-0.5) 		32.8
(3) 		23.8
(0.3) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185545_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5642
Sequence Type Exemplar sequence
Representative Public ID F19B10.5 NCBI
Target Description F19B10.5 /REP_DB=WormBase Gene ID /WP=CE09472 /TR=O02067 /GB=AAB52925.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062204(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062204 NCBI Caenorhabditis elegans F19B10.5 (F19B10.5) mRNA, complete cds. 11/11 None
SNAP00000017110 ENSEMBL cdna:SNAP chromosome:CEL140:II:3656473:3657879:1 11/11 None
GENEFINDER00000017139 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3655692:3657879:1 11/11 None
F19B10.5 ENSEMBL cdna:known chromosome:CEL140:II:3655692:3657726:1 gene:F19B10.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3655690-3657725(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F19B10.5
Entrez Gene 184670 Entrez gene
SwissProt O02067 EMBL-EBI
WormBase CE09472 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52925 Hypothetical protein F19B10.5 [Caenorhabditis elegans] ref|NP_494605.1| F19B10.5 [Caenorhabditis elegans] 1.0E-172
blast AAB52925 Hypothetical protein F19B10.5 [Caenorhabditis elegans] ref|NP_494605.1| F19B10.5 [Caenorhabditis elegans] 1.0E-169
blast AAB52925 Hypothetical protein F19B10.5 [Caenorhabditis elegans] ref|NP_494605.1| F19B10.5 [Caenorhabditis elegans] 1.0E-144
Sequence
Target Sequence 
>C. ELEGANS:185545_AT
cgccgaaatcgatgtgagctgccacaagctctcagccttatggttccagttgtactatag
ccacaaggccgagcgcacagctgagcgcacggagccgcagcagacagaaaaccttggctt
ctcgataaaaaaggaaatcctggaccacgatgagctcagtccgccatcctcttgctccac
caacagcgtagtttattcggatccaaccggcctagagtttgatgatattactccctttga
cccggatgcctctgatgttgtggaagttcccgcttctccaccagtctttatcgaaaagct
ctcctttgcagacggagttcggctttaccgggcgtggggcccagaagagaagctagcagg
gatcaacggcgttgacttcacaaaatttatgtttaatgtgaacactcccactaaactccc
acaattcgtaagaaaagcgtccaatggggtgactctgtttcgag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGCCGAAATCGATGTGAGCTGCCAC 526 255 435 Antisense
CCACAAGCTCTCAGCCTTATGGTTC 577 275 456 Antisense
CAAGGCCGAGCGCACAGCTGAGCGC 609 181 498 Antisense
ATCCTGGACCACGATGAGCTCAGTC 85 39 571 Antisense
GGATCCAACCGGCCTAGAGTTTGAT 67 503 633 Antisense
TTGATGATATTACTCCCTTTGACCC 280 707 653 Antisense
CCCGGATGCCTCTGATGTTGTGGAA 180 261 675 Antisense
CTTCTCCACCAGTCTTTATCGAAAA 315 221 707 Antisense
ATCGAAAAGCTCTCCTTTGCAGACG 262 37 724 Antisense
TTTGCAGACGGAGTTCGGCTTTACC 678 667 739 Antisense
TCCAATGGGGTGACTCTGTTTCGAG 17 587 874 Antisense
Sequence Source Affymetrix Proprietary Database