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[185544_at]

Description F55E10.1 /REP_DB=WormBase Gene ID /WP=CE02781 /TR=Q20839 /GB=AAC46530.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 02      4grp_total > 52      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 51
1 2 3 4 range
A 32.3
(3)
A 		3.5
(-3)
A 		26.7
(1.8)
A 		3.3
(-3)
A 		29
B 13.5
(-1.6)
A 		49.3
(3)
A 		39.5
(1.7)
A 		2.9
(-3)
A 		46
C 53.6
(3)
A 		50.1
(2.3)
A 		21.6
(-3)
A 		45.7
(1.5)
A 		32
avr 33.1
(2.6) 		34.3
(3) 		29.3
(1.2) 		17.3
(-3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 4.8
(-2.6)
A 		42.1
(3)
A 		34.5
(1.9)
A 		5.8
(-2.4)
A 		30.4
(1.2)
A 		2.1
(-3)
A 		40
B 28.6
(2)
A 		33.7
(3)
A 		4
(-2.7)
A 		14.4
(-0.7)
A 		20.4
(0.5)
A 		2.4
(-3)
A 		31
C 29.2
(-0.7)
A 		66.2
(3)
A 		6.3
(-3)
A 		50.2
(1.4)
A 		15.1
(-2.1)
A 		6.5
(-3)
A 		60
avr 20.9
(-0.6) 		47.3
(3) 		14.9
(-1.5) 		23.5
(-0.3) 		22
(-0.5) 		3.7
(-3) 		44
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 11.8
(3)
A 		0.8
(-2.8)
A 		7
(0.5)
A 		0.5
(-3)
A 		11
B 4.3
(-1.1)
A 		12.2
(3)
A 		9.1
(1.4)
A 		0.6
(-3)
A 		12
C 17.7
(3)
A 		14.4
(1.1)
A 		7.5
(-3)
A 		7.7
(-2.9)
A 		10
avr 11.3
(3) 		9.1
(1.4) 		7.9
(0.6) 		2.9
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 0.9
(-2.8)
A 		15
(3)
A 		7.5
(-0.1)
A 		1.5
(-2.6)
A 		9.2
(0.6)
A 		0.5
(-3)
A 		15
B 9.9
(2.2)
A 		11.2
(3)
A 		1
(-2.9)
A 		3.8
(-1.3)
A 		8.3
(1.3)
A 		0.9
(-3)
A 		10
C 10.8
(-0)
A 		20.2
(3)
A 		1.6
(-3)
A 		10.1
(-0.3)
A 		4.9
(-1.9)
A 		2.2
(-2.8)
A 		19
avr 7.2
(-0.5) 		15.5
(3) 		3.4
(-2.1) 		5.1
(-1.4) 		7.5
(-0.4) 		1.2
(-3) 		14
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185544_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17013
Sequence Type Exemplar sequence
Representative Public ID F55E10.1 NCBI
Target Description F55E10.1 /REP_DB=WormBase Gene ID /WP=CE02781 /TR=Q20839 /GB=AAC46530.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077013(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077013 NCBI Caenorhabditis elegans F55E10.1 (F55E10.1) mRNA, complete cds. 11/11 None
GENEFINDER00000011822 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8340631:8342224:1 11/11 None
SNAP00000011817 ENSEMBL cdna:SNAP chromosome:CEL140:X:8341913:8342224:1 11/11 None
F55E10.1 ENSEMBL cdna:known chromosome:CEL140:X:8341913:8342224:1 gene:F55E10.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8341911-8342223(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F55E10.1
Entrez Gene 186310 Entrez gene
SwissProt Q20839 EMBL-EBI
WormBase CE02781 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC46530 Hypothetical protein F55E10.1 [Caenorhabditis elegans] ref|NP_509414.1| F55E10.1 [Caenorhabditis elegans] 2.0E-43
blast AAC46530 Hypothetical protein F55E10.1 [Caenorhabditis elegans] ref|NP_509414.1| F55E10.1 [Caenorhabditis elegans] 5.0E-43
blast AAC46531 Hypothetical protein F55E10.2 [Caenorhabditis elegans] ref|NP_509413.1| F55E10.2 [Caenorhabditis elegans] 8.0E-38
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509414.1 1 26-48
F55E10.1 1 26-48
GENEFINDER00000011822 2 27-49,120-142
SNAP00000011817 1 26-48
Sequence
Target Sequence 
>C. ELEGANS:185544_AT
cttcacctcaactttggccaatggtgactttgtgcacgccgaggatcacaccacagctat
tgttgttcttctcatcattctcatcttctgtctgttgatggcaatgtttgtctgttatct
cggctggtctggtgttgtcacggatatgagcgattcacgtgtcggagatggcacactcgt
tggctacgaccttgaggtgtttggaccggtggactggtttgatgacgaagaggagatgca
acttgctccaggcaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTCACCTCAACTTTGGCCAATGGT 32 221 36 Antisense
GGCCAATGGTGACTTTGTGCACGCC 65 541 51 Antisense
TTTGTGCACGCCGAGGATCACACCA 508 665 64 Antisense
CACCACAGCTATTGTTGTTCTTCTC 230 203 84 Antisense
TCATTCTCATCTTCTGTCTGTTGAT 493 619 110 Antisense
CAATGTTTGTCTGTTATCTCGGCTG 232 183 137 Antisense
GCTGGTCTGGTGTTGTCACGGATAT 282 295 158 Antisense
TGTCGGAGATGGCACACTCGTTGGC 602 557 195 Antisense
CACTCGTTGGCTACGACCTTGAGGT 668 197 209 Antisense
GGACCGGTGGACTGGTTTGATGACG 397 523 238 Antisense
GGAGATGCAACTTGCTCCAGGCAAC 245 519 267 Antisense
Sequence Source Affymetrix Proprietary Database