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[185542_at]

Description C05B10.2 /REP_DB=WormBase Gene ID /WP=CE16826 /TR=O44129 /GB=AAB88309.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 05      4grp_total > 31      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 127
1 2 3 4 range
A 130.5
(3)
P 		14.1
(-2.5)
A 		4.1
(-3)
A 		47
(-1)
A 		126
B 114.9
(3)
P 		10.5
(-2.9)
A 		8.2
(-3)
A 		41.4
(-1.1)
A 		107
C 108.8
(3)
P 		3.3
(-3)
A 		8.6
(-2.7)
A 		71.9
(0.9)
A 		106
avr 118.1
(3) 		9.3
(-2.9) 		7
(-3) 		53.4
(-0.5) 		111

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 106
1 2 3 4 5 6 range
A 72
(3)
A 		36.8
(-0.2)
A 		47.7
(0.8)
A 		28.5
(-1)
A 		29.1
(-0.9)
A 		6.8
(-3)
A 		65
B 72.1
(3)
A 		34.7
(-0.4)
A 		60.4
(1.9)
A 		56.7
(1.6)
P 		39.3
(0)
M 		6.3
(-3)
A 		66
C 112.1
(3)
P 		63.7
(-0.3)
A 		60.9
(-0.5)
A 		37.6
(-2.1)
A 		46.7
(-1.5)
P 		24.7
(-3)
A 		87
avr 85.4
(3) 		45.1
(-0.3) 		56.3
(0.6) 		40.9
(-0.7) 		38.4
(-0.9) 		12.6
(-3) 		73
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 47.5
(3)
P 		3.1
(-2.7)
A 		1.1
(-3)
A 		6.9
(-2.3)
A 		46
B 36.6
(3)
P 		2.6
(-2.9)
A 		1.9
(-3)
A 		8.8
(-1.8)
A 		35
C 36
(3)
P 		1
(-3)
A 		3
(-2.7)
A 		12.1
(-1.1)
A 		35
avr 40
(3) 		2.2
(-3) 		2
(-3) 		9.3
(-1.8) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 13.3
(3)
A 		13.1
(2.9)
A 		10.4
(1.5)
A 		7.2
(-0.2)
A 		8.8
(0.7)
A 		1.7
(-3)
A 		12
B 25.1
(3)
A 		11.5
(-0.6)
A 		14.7
(0.3)
A 		15
(0.3)
P 		15.9
(0.6)
M 		2.3
(-3)
A 		23
C 41.5
(3)
P 		19.4
(-0.9)
A 		15.5
(-1.6)
A 		7.6
(-3)
A 		15.1
(-1.7)
P 		8.3
(-2.9)
A 		34
avr 26.6
(3) 		14.7
(-0.2) 		13.5
(-0.5) 		9.9
(-1.5) 		13.3
(-0.5) 		4.1
(-3) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185542_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10115
Sequence Type Exemplar sequence
Representative Public ID C05B10.2 NCBI
Target Description C05B10.2 /REP_DB=WormBase Gene ID /WP=CE16826 /TR=O44129 /GB=AAB88309.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171369, NM_001028174, NM_171370
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
R13H7.2a ENSEMBL cdna:known chromosome:CEL140:IV:6846078:6859335:-1 gene:R13H7.2 A 
R13H7.2b ENSEMBL cdna:known chromosome:CEL140:IV:6846806:6852795:-1 gene:R13H7.2 A 
NM_171370 NCBI Caenorhabditis elegans R13H7.2a (R13H7.2) mRNA, complete cds. A 
NM_001028174 NCBI Caenorhabditis elegans R13H7.2c (R13H7.2) mRNA, complete cds. None
R13H7.2c ENSEMBL cdna:known chromosome:CEL140:IV:6846806:6850483:-1 gene:R13H7.2 A 
NM_171369 NCBI Caenorhabditis elegans R13H7.2b (R13H7.2) mRNA, complete cds. A 
GENEFINDER00000029609 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:6846806:6850825:-1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6846516-6847662(-) 100.0 100.0
Public Domain and Genome References
Ensembl R13H7.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_741433 R13H7.2a [Caenorhabditis elegans] 0.0
blast ABA03113 Hypothetical protein R13H7.2a [Caenorhabditis elegans] 0.0
blast NP_001023345 R13H7.2c [Caenorhabditis elegans] 0.0
blast NP_741432 R13H7.2b [Caenorhabditis elegans] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_741433.2 6 82-104,113-135,155-177,198-220,262-284,321-343
NP_741432.2 6 50-72,81-103,123-145,166-188,230-252,289-311
NP_001023345.1 6 44-66,75-97,117-139,160-182,224-246,283-305
R13H7.2a 6 82-104,113-135,155-177,198-220,262-284,321-343
R13H7.2b 6 50-72,81-103,123-145,166-188,230-252,289-311
R13H7.2c 6 44-66,75-97,117-139,160-182,224-246,283-305
GENEFINDER00000029609 7 82-104,113-135,155-177,198-220,262-284,321-343,356-378
Sequence
Target Sequence 
>C. ELEGANS:185542_AT
atgacgttcgacatgtgtggtgccaaaaagaagttcagtggtgtctctagcgcacaatca
attaaaagtcaagcttacagactcaccagaagctgctctaacatttataaaaaattttca
caaccaaaatcaataggcaattatatttctttaaagaaaaaatctaacatttttacagat
tccgggatcgggacgacatccagagacaaagcagttgatctacaatacccagtttttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGACGTTCGACATGTGTGGTGCCA 353 45 13 Antisense
GTGTGGTGCCAAAAAGAAGTTCAGT 585 475 27 Antisense
AAGTTCAGTGGTGTCTCTAGCGCAC 61 157 43 Antisense
GTCTCTAGCGCACAATCAATTAAAA 148 469 55 Antisense
GTCAAGCTTACAGACTCACCAGAAG 138 465 80 Antisense
GACTCACCAGAAGCTGCTCTAACAT 580 373 92 Antisense
GAAGCTGCTCTAACATTTATAAAAA 364 343 101 Antisense
ACATTTTTACAGATTCCGGGATCGG 420 103 179 Antisense
GATTCCGGGATCGGGACGACATCCA 41 431 190 Antisense
GATCGGGACGACATCCAGAGACAAA 159 417 198 Antisense
GTTGATCTACAATACCCAGTTTTTC 554 437 226 Antisense
Sequence Source Affymetrix Proprietary Database