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[185541_at]

Description C09E10.1 /REP_DB=WormBase Gene ID /WP=CE06800 /TR=Q17861 /GB=AAC48133.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 44      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 84
(1)
A 		101.1
(3)
A 		61.4
(-1.7)
A 		50.9
(-3)
A 		50
B 69.1
(3)
A 		66.8
(2.5)
P 		48.8
(-1.4)
A 		41.1
(-3)
P 		28
C 96.2
(3)
A 		82.1
(0.9)
A 		55.3
(-3)
A 		87.9
(1.8)
P 		41
avr 83.1
(3) 		83.3
(3) 		55.2
(-3) 		60
(-2) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 97.2
(2.2)
A 		73.9
(0.6)
A 		22.2
(-3)
A 		108.1
(3)
A 		54.4
(-0.8)
A 		46.2
(-1.3)
A 		86
B 33.7
(-3)
A 		93.8
(2.5)
A 		82.6
(1.5)
A 		99.6
(3)
A 		34.6
(-2.9)
A 		49.9
(-1.5)
A 		66
C 81.6
(0.2)
A 		106.4
(3)
A 		66.1
(-1.6)
A 		96.2
(1.8)
M 		53.5
(-3)
A 		68.5
(-1.3)
A 		53
avr 70.8
(-0.4) 		91.4
(1.9) 		57
(-1.9) 		101.3
(3) 		47.5
(-3) 		54.9
(-2.2) 		54
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 24
1 2 3 4 range
A 30.6
(3)
A 		21.9
(0.7)
A 		16
(-0.8)
A 		7.5
(-3)
A 		23
B 22
(3)
A 		16.5
(0.5)
P 		11.3
(-1.9)
A 		8.8
(-3)
P 		13
C 31.8
(3)
A 		23.6
(0.1)
A 		19.3
(-1.4)
A 		14.8
(-3)
P 		17
avr 28.1
(3) 		20.7
(0.5) 		15.5
(-1.3) 		10.4
(-3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 28
1 2 3 4 5 6 range
A 17.9
(0.5)
A 		26.3
(2.7)
A 		4.8
(-3)
A 		27.4
(3)
A 		16.4
(0.1)
A 		11.2
(-1.3)
A 		23
B 11.7
(-3)
A 		31.2
(3)
A 		20.1
(-0.4)
A 		26.4
(1.5)
A 		14.1
(-2.3)
A 		18.6
(-0.9)
A 		20
C 30.2
(2.1)
A 		32.5
(3)
A 		16.8
(-3)
A 		19.4
(-2)
M 		17.3
(-2.8)
A 		22.9
(-0.7)
A 		16
avr 19.9
(-0.8) 		30
(3) 		13.9
(-3) 		24.4
(0.9) 		15.9
(-2.3) 		17.6
(-1.6) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185541_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18517
Sequence Type Exemplar sequence
Representative Public ID C09E10.1 NCBI
Target Description C09E10.1 /REP_DB=WormBase Gene ID /WP=CE06800 /TR=Q17861 /GB=AAC48133.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075791(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075791 NCBI Caenorhabditis elegans F55A4.10 (F55A4.10) mRNA, complete cds. 11/11 None
GENEFINDER00000039525 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1004343:1011788:1 11/11 None
F55A4.10 ENSEMBL cdna:known chromosome:CEL140:X:1004334:1009409:1 gene:F55A4.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000039506 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1004342-1008109(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F55A4.10
Entrez Gene 180453 Entrez gene
SwissProt Q95Q52 EMBL-EBI
WormBase CE35556 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL06028 Hypothetical protein F55A4.10 [Caenorhabditis elegans] ref|NP_508192.2| F55A4.10 [Caenorhabditis elegans] 0.0
blast CAE63585 Hypothetical protein CBG08074 [Caenorhabditis briggsae] 5.0E-90
blast CAE63585 Hypothetical protein CBG08074 [Caenorhabditis briggsae] 6.0E-90
blast CAE63586 Hypothetical protein CBG08077 [Caenorhabditis briggsae] 3.0E-65
blast CAE63586 Hypothetical protein CBG08077 [Caenorhabditis briggsae] 4.0E-65
Protein Domains
Database ID Description E-Value
Pfam IPR001507 EMBL-EBI Endoglin/CD105 antigen 1.5E-4
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508192.2 1 299-321
F55A4.10 1 299-321
GENEFINDER00000039525 2 4-23,298-320
Sequence
Target Sequence 
>C. ELEGANS:185541_AT
gagggactcttcaaatttcggtgggactcccaatcttttgccaactcaaggtttcaactc
tgaacaatttgctgcaacaactttacgaaatgggcaaaacatgaatggaaattgggaagc
aaatcggaatacgaatgctccgaataattttcaagtggaaactggaaatgatgaggcgat
aaatgggaatagcatgggaagtgttccaggaatgggaaatagttttaataattttgatac
attaaacactggtcaaagttctaaaaaacgctctttctctatgattttcattactgccgt
tatattaattgtattggtattccttgcactaccaccaccagttgctgctaaaccgaaaca
ctttgataacagactggaatcccataacacatctgttgggagacatttattcagatctcc
agcagcaagaaacttcccggatctatcaatagta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGGGACTCTTCAAATTTCGGTGGG 174 401 621 Antisense
TCGGTGGGACTCCCAATCTTTTGCC 234 605 638 Antisense
GCCAACTCAAGGTTTCAACTCTGAA 522 277 660 Antisense
AAACGCTCTTTCTCTATGATTTTCA 242 127 886 Antisense
ATGATTTTCATTACTGCCGTTATAT 193 47 901 Antisense
ATTGGTATTCCTTGCACTACCACCA 397 3 933 Antisense
CCACCAGTTGCTGCTAAACCGAAAC 24 275 955 Antisense
ACTGGAATCCCATAACACATCTGTT 367 97 993 Antisense
GACATTTATTCAGATCTCCAGCAGC 190 371 1022 Antisense
TCTCCAGCAGCAAGAAACTTCCCGG 709 609 1036 Antisense
AAACTTCCCGGATCTATCAATAGTA 167 129 1050 Antisense
Sequence Source Affymetrix Proprietary Database