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[185540_s_at]

Description H28G03.6 /REP_DB=WormBase Gene ID /WP=CE23833 /TR=Q9TXP3 /GB=AAC67405.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 53      6grp_high1_10_10 > 34      4grp_highest_8_8 > 53      4grp_high_8_8 > 17      6grp_highest_nonorm > 72      6grp_total > 35      4grp_total > 30      6grp_highest_sub > 02      6grp_cgc > 44      6grp_high1_sub > 02      6grp_cgc_sub > 02      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 197
1 2 3 4 range
A 501.4
(3)
P 		396.7
(-3)
P 		397
(-3)
P 		415.8
(-1.9)
P 		105
B 492.9
(1.2)
P 		387.8
(-2)
P 		355.3
(-3)
P 		552.1
(3)
P 		197
C 431.7
(3)
P 		402.1
(0.5)
P 		390.6
(-0.4)
P 		359.7
(-3)
P 		72
avr 475.3
(3) 		395.5
(-2.1) 		381
(-3) 		442.5
(0.9) 		94

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 248
1 2 3 4 5 6 range
A 403.4
(-3)
P 		550.5
(3)
P 		431.8
(-1.8)
P 		434.3
(-1.7)
P 		435.6
(-1.7)
P 		507.7
(1.3)
P 		147
B 518.3
(1)
P 		569.1
(3)
P 		470.3
(-0.8)
P 		464.1
(-1)
P 		413.5
(-3)
P 		460.8
(-1.2)
P 		156
C 501.2
(0.6)
P 		600.9
(3)
P 		541.1
(1.6)
P 		353.3
(-3)
P 		401.1
(-1.8)
P 		427.5
(-1.2)
P 		248
avr 474.3
(-0.8) 		573.5
(3) 		481.1
(-0.5) 		417.2
(-3) 		416.7
(-3) 		465.3
(-1.1) 		157
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 122
1 2 3 4 range
A 182.6
(3)
P 		86.1
(-1.8)
P 		103.8
(-0.9)
P 		60.9
(-3)
P 		122
B 157.2
(3)
P 		95.8
(-1.9)
P 		82.3
(-3)
P 		117.7
(-0.2)
P 		75
C 142.9
(3)
P 		115.6
(1)
P 		136.1
(2.5)
P 		60.7
(-3)
P 		82
avr 160.9
(3) 		99.2
(-1.6) 		107.4
(-1) 		79.8
(-3) 		81

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 125
1 2 3 4 5 6 range
A 74.4
(-3)
P 		195.8
(3)
P 		94
(-2)
P 		110.1
(-1.2)
P 		131.5
(-0.2)
P 		123.6
(-0.6)
P 		121
B 180.3
(2.3)
P 		189.4
(3)
P 		114.2
(-3)
P 		122.9
(-2.3)
P 		168
(1.3)
P 		171.8
(1.6)
P 		75
C 185.8
(3)
P 		183.3
(2.9)
P 		137.7
(0.5)
P 		71
(-3)
P 		129.8
(0.1)
P 		143.1
(0.8)
P 		115
avr 146.8
(0.1) 		189.5
(3) 		115.3
(-2) 		101.3
(-3) 		143.1
(-0.2) 		146.2
(0.1) 		88
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185540_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17128
Sequence Type Exemplar sequence
Representative Public ID H28G03.6 NCBI
Target Description H28G03.6 /REP_DB=WormBase Gene ID /WP=CE23833 /TR=Q9TXP3 /GB=AAC67405.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076487(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076487 NCBI Caenorhabditis elegans MTM (myotubularin) family member (mtm-5) (mtm-5) mRNA, complete cds. 11/11 None
H28G03.6 ENSEMBL cdna:known chromosome:CEL140:X:5234662:5243354:-1 gene:H28G03.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5234922-5243355(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol mtm-5
Ensembl H28G03.6
Entrez Gene 180792 Entrez gene
SwissProt Q9TXP3 EMBL-EBI
WormBase CE35733 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1592971_AT similar to SET binding factor 2 cfa
CANINE_2:CFA.14410.1.A1_S_AT similar to SET binding factor 2 cfa
CANINE_2:CFAAFFX.12137.1.S1_S_AT similar to SET binding factor 2 cfa
DROSOPHILA_2:1625187_A_AT SET domain binding factor dm
DROSGENOME1:141798_AT SET domain binding factor dm
CHICKEN:GGA.17512.1.S1_AT SET binding factor 2 gga
CHICKEN:GGA.18065.1.S1_S_AT SET binding factor 2 gga
CHICKEN:GGAAFFX.3576.1.S1_S_AT SET binding factor 2 gga
HG-U133_PLUS_2:233914_S_AT SET binding factor 2 hs
HG-U133B:233914_S_AT SET binding factor 2 hs
HU35KSUBB:RC_H95071_S_AT SET binding factor 2 hs
HU35KSUBC:RC_R69330_I_AT SET binding factor 2 hs
HU35KSUBC:RC_R69330_R_AT SET binding factor 2 hs
HU35KSUBD:RC_R52286_AT SET binding factor 2 hs
U133_X3P:HS2.382977.1.S1_3P_X_AT SET binding factor 2 hs
U133_X3P:HS.289018.0.S1_3P_AT SET binding factor 2 hs
U133_X3P:HS.210322.1.S1_3P_A_AT SET binding factor 2 hs
U133_X3P:HS.133984.0.S1_3P_AT SET binding factor 2 hs
HG-U133_PLUS_2:1569114_AT SET binding factor 2 hs
HG-U133_PLUS_2:226169_AT SET binding factor 2 hs
HG-U133B:226169_AT SET binding factor 2 hs
HG-U133_PLUS_2:242935_AT SET binding factor 2 hs
HG-U133B:242935_AT SET binding factor 2 hs
HG-U95B:44824_AT SET binding factor 2 hs
HG-U95B:59668_AT SET binding factor 2 hs
HG-U95D:70525_AT SET binding factor 2 hs
HG-U133_PLUS_2:242786_AT SET binding factor 2 hs
HG-U133B:242786_AT SET binding factor 2 hs
U133_X3P:HS.133984.1.A1_3P_AT SET binding factor 2 hs
HG-U95D:78523_AT SET binding factor 2 hs
HG-U95E:79998_AT SET binding factor 2 hs
HG-U133_PLUS_2:1566425_AT SET binding factor 2 hs
HG-U133_PLUS_2:1566426_AT SET binding factor 2 hs
HG-U133_PLUS_2:240326_AT SET binding factor 2 hs
HG-U133B:240326_AT SET binding factor 2 hs
HG-U95C:60611_AT SET binding factor 2 hs
HG-U95E:75689_AT SET binding factor 2 hs
HG-U95E:79131_R_AT SET binding factor 2 hs
HG-U95D:84424_AT SET binding factor 2 hs
HU35KSUBC:RC_H68719_AT SET binding factor 2 hs
HU35KSUBC:RC_N90218_AT SET binding factor 2 hs
U133_X3P:HS.159501.0.A1_3P_AT SET binding factor 2 hs
U133_X3P:HS.159501.0.A1_3P_X_AT SET binding factor 2 hs
MOUSE430A_2:1443762_S_AT SET binding factor 2 mm
MOE430A:1443762_S_AT SET binding factor 2 mm
MOUSE430_2:1443762_S_AT SET binding factor 2 mm
MU11KSUBA:AA619736_AT SET binding factor 2 mm
MG-U74AV2:104427_AT SET binding factor 2 mm
MG-U74BV2:107439_AT SET binding factor 2 mm
MOE430A:1427132_AT SET binding factor 2 mm
MOUSE430A_2:1427132_AT SET binding factor 2 mm
MOUSE430_2:1427132_AT SET binding factor 2 mm
MOE430B:1457689_AT SET binding factor 2 mm
MOUSE430_2:1457689_AT SET binding factor 2 mm
MOE430B:1443160_AT SET binding factor 2 mm
MOUSE430_2:1443160_AT SET binding factor 2 mm
MOE430B:1431433_AT SET binding factor 2 mm
MOUSE430_2:1431433_AT SET binding factor 2 mm
MG-U74BV2:105442_AT Myotubularin related protein 13, mRNA (cDNA clone IMAGE:3668035) mm
MU19KSUBC:TC39560_AT Myotubularin related protein 13, mRNA (cDNA clone IMAGE:3668035) mm
RG-U34B:RC_AI059932_AT similar to SET binding factor 2 rn
RAE230A:1377519_A_AT similar to SET binding factor 2 rn
RAT230_2:1377519_A_AT similar to SET binding factor 2 rn
RAE230A:1375171_AT Similar to SET binding factor 2 rn
RAT230_2:1375171_AT Similar to SET binding factor 2 rn
RAE230A:1375888_AT Similar to SET binding factor 2 rn
RAT230_2:1375888_AT Similar to SET binding factor 2 rn
RAE230B:1396031_AT Similar to SET binding factor 2 rn
RAT230_2:1396031_AT Similar to SET binding factor 2 rn
RG-U34A:RC_AA875152_AT Similar to SET binding factor 2 rn
RG-U34B:RC_AA957666_AT Similar to SET binding factor 2 rn
Protein Similarities
Method ID Description E-Value
blast AAC67405 Mtm (myotubularin) family protein 5 [Caenorhabditis elegans] ref|NP_508888.2| MTM (myotubularin) family member (mtm-5) [Caenorhabditis elegans] 0.0
blast CAE68715 Hypothetical protein CBG14641 [Caenorhabditis briggsae] 0.0
blast EAL28819 GA19970-PA [Drosophila pseudoobscura] 1.0E-133
Protein Domains
Database ID Description E-Value
Pfam IPR005112 EMBL-EBI dDENN domain 2.4E-27
Pfam IPR010569 EMBL-EBI Myotubularin-related 1.6E-33
Pfam IPR004182 EMBL-EBI GRAM domain 3.6E-20
Pfam IPR001194 EMBL-EBI DENN (AEX-3) domain 1.6E-69
Pfam IPR001849 EMBL-EBI Pleckstrin-like 4.7E-15
Pfam IPR005113 EMBL-EBI uDENN domain 9.2E-30
Sequence
Target Sequence 
>C. ELEGANS:185540_S_AT
gacgccattcacagtaggagcaaggccggttcaatctgttcactgcaagaaatgccgcat
tcacgttcacgaagggtgtgtgaatcgtaacattacaataggtaacatcacgcatacctg
ggatgcaaagccatttgaagacattaagatgccctcaggagctattcaaataggcacccc
acaagctgaaaaaatgctccacagcccaaataatacgttgactcgtgaatcaatgtctcc
accaactgcgaacacaattcctccactttgcactggatacttgagcaagcgaggagccaa
acttaaactttgggtgccacgattttttgttttgtacccggattctccgaaagtctatta
ctacgaggactttgagaactggaaaactgctgagaagccatcaggatgtatagatctggt
ggactttaaaagttttaatttagaacaaactggccggagaggtttgattgagcttcatat
gaaaaacaagacgcatcgactactctct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGCCATTCACAGTAGGAGCAAGG 130 381 4641 Antisense
GCCGCATTCACGTTCACGAAGGGTG 214 285 4694 Antisense
GTAACATCACGCATACCTGGGATGC 646 461 4742 Antisense
TAAGATGCCCTCAGGAGCTATTCAA 338 637 4785 Antisense
CAAATAGGCACCCCACAAGCTGAAA 64 195 4807 Antisense
ATGCTCCACAGCCCAAATAATACGT 436 41 4834 Antisense
GACTCGTGAATCAATGTCTCCACCA 118 375 4860 Antisense
AATTCCTCCACTTTGCACTGGATAC 691 177 4896 Antisense
TGGGTGCCACGATTTTTTGTTTTGT 215 553 4951 Antisense
GGCCGGAGAGGTTTGATTGAGCTTC 138 543 5092 Antisense
AAACAAGACGCATCGACTACTCTCT 14 129 5124 Antisense
Sequence Source Affymetrix Proprietary Database