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[185539_at]

Description H11E01.1 /REP_DB=WormBase Gene ID /WP=CE17970 /TR=O61804 /GB=AAC17019.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 63      4grp_total > 19      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 17.8
(-2.3)
A 		20.3
(-2)
A 		12.4
(-3)
A 		61.3
(3)
A 		49
B 8.4
(-3)
A 		21.3
(-1.3)
A 		52.8
(3)
A 		15
(-2.1)
A 		44
C 59.9
(3)
A 		45.3
(1)
A 		15.4
(-3)
A 		20.8
(-2.3)
A 		45
avr 28.7
(-1) 		29
(-0.7) 		26.9
(-3) 		32.4
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 116
1 2 3 4 5 6 range
A 5.1
(-3)
A 		28.2
(-1.8)
A 		120.9
(3)
A 		11.9
(-2.6)
A 		18.1
(-2.3)
A 		29.4
(-1.7)
A 		116
B 14.8
(-2.6)
A 		17.6
(-2.4)
A 		87.3
(3)
A 		39.3
(-0.7)
A 		9.2
(-3)
A 		39.3
(-0.7)
A 		78
C 19.2
(-2.3)
A 		44.3
(-0.6)
A 		54.3
(0.1)
A 		98.4
(3)
A 		27.4
(-1.7)
A 		8
(-3)
A 		90
avr 13
(-3) 		30
(-1.6) 		87.5
(3) 		49.9
(-0) 		18.2
(-2.6) 		25.6
(-2) 		75
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 6.5
(0.4)
A 		4.4
(-1.8)
A 		3.3
(-3)
A 		9
(3)
A 		6
B 2.7
(-3)
A 		5.3
(-1.4)
A 		12.2
(3)
A 		3.2
(-2.7)
A 		10
C 19.8
(3)
A 		13
(0.5)
A 		5.4
(-2.3)
A 		3.5
(-3)
A 		16
avr 9.7
(3) 		7.6
(0.2) 		7
(-0.6) 		5.2
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 0.9
(-3)
A 		10
(-0.9)
A 		26.3
(3)
A 		3
(-2.5)
A 		5.5
(-1.9)
A 		7.2
(-1.5)
A 		25
B 5.1
(-2.6)
A 		5.8
(-2.3)
A 		21.2
(3)
A 		10.4
(-0.7)
A 		3.8
(-3)
A 		14.7
(0.8)
A 		17
C 7.1
(-1.5)
A 		13.5
(0.8)
A 		13.8
(0.9)
A 		19.8
(3)
A 		8.9
(-0.8)
A 		2.7
(-3)
A 		17
avr 4.4
(-3) 		9.8
(-1) 		20.4
(3) 		11.1
(-0.5) 		6.1
(-2.4) 		8.2
(-1.6) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185539_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18521
Sequence Type Exemplar sequence
Representative Public ID H11E01.1 NCBI
Target Description H11E01.1 /REP_DB=WormBase Gene ID /WP=CE17970 /TR=O61804 /GB=AAC17019.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075900(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075900 NCBI Caenorhabditis elegans H11E01.1 (H11E01.1) mRNA, complete cds. 11/11 None
SNAP00000026593 ENSEMBL cdna:SNAP chromosome:CEL140:X:1628801:1629449:1 11/11 None
GENEFINDER00000026602 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1628801:1629449:1 11/11 None
H11E01.1 ENSEMBL cdna:known chromosome:CEL140:X:1627053:1629449:1 gene:H11E01.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1627052-1629449(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl H11E01.1
Entrez Gene 186720 Entrez gene
SwissProt O61804 EMBL-EBI
WormBase CE17970 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17019 Hypothetical protein H11E01.1 [Caenorhabditis elegans] ref|NP_508301.1| H11E01.1 [Caenorhabditis elegans] 1.0E-169
blast AAC17019 Hypothetical protein H11E01.1 [Caenorhabditis elegans] ref|NP_508301.1| H11E01.1 [Caenorhabditis elegans] 1.0E-124
blast CAB04475 Hypothetical protein F55C9.7 [Caenorhabditis elegans] ref|NP_507756.1| F55C9.7 [Caenorhabditis elegans] 2.0E-33
blast CAB04470 Hypothetical protein F55C9.13 [Caenorhabditis elegans] ref|NP_001023984.1| F55C9.13 [Caenorhabditis elegans] pir||T22723 hypothetical protein F55C9.9 - Caenorhabditis elegans 5.0E-27
blast CAB04475 Hypothetical protein F55C9.7 [Caenorhabditis elegans] ref|NP_507756.1| F55C9.7 [Caenorhabditis elegans] 3.0E-24
Sequence
Target Sequence 
>C. ELEGANS:185539_AT
gtggagccctttgtatgctggactacgcacatttatcgaacatttcccagtggtattcca
tcgagataatgtgcataggctgtcgattagcaacgtcgatcatgactggaagttcatttc
caatgaaatgaatggcttggagattcccgtaacatggttctccgcatcaactgacgatat
ccacctccagaagcttatcaacaactgttctagtggattattgagttatgagaatattca
cactgacaattcttcatggcttcgccaaattctctgcgtccatcgaaaccagttggaagt
gtaccaaacatgttccgtttccaacttgctaatagtaagcaccaatagtgagaatgtgac
attgtgggagccgaatactgccaaggatctcaatctcttcctga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGAGCCCTTTGTATGCTGGACTA 687 489 276 Antisense
GCTGGACTACGCACATTTATCGAAC 155 295 292 Antisense
GAACATTTCCCAGTGGTATTCCATC 517 351 313 Antisense
GAGATTCCCGTAACATGGTTCTCCG 616 397 415 Antisense
GTTCTCCGCATCAACTGACGATATC 519 441 432 Antisense
TATCCACCTCCAGAAGCTTATCAAC 2 659 453 Antisense
TCATGGCTTCGCCAAATTCTCTGCG 401 623 529 Antisense
TCTCTGCGTCCATCGAAACCAGTTG 616 611 546 Antisense
ATGTTCCGTTTCCAACTTGCTAATA 350 47 585 Antisense
GACATTGTGGGAGCCGAATACTGCC 115 371 633 Antisense
GCCAAGGATCTCAATCTCTTCCTGA 617 277 655 Antisense
Sequence Source Affymetrix Proprietary Database