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[185538_at]

Description F55E10.2 /REP_DB=WormBase Gene ID /WP=CE02782 /TR=Q20838 /GB=AAC46531.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 60      4grp_total > 16      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 54
1 2 3 4 range
A 6.7
(-2.7)
A 		46.6
(2.9)
A 		4.9
(-3)
A 		47
(3)
A 		42
B 10.4
(-2.1)
A 		3.8
(-3)
A 		34
(1.2)
A 		46.6
(3)
A 		43
C 5.2
(-2.9)
A 		4.3
(-3)
A 		24
(-0.8)
A 		58.2
(3)
A 		54
avr 7.4
(-3) 		18.2
(-1.5) 		21
(-1.1) 		50.6
(3) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 41
1 2 3 4 5 6 range
A 41.9
(3)
A 		3.1
(-2.7)
A 		2
(-2.9)
A 		39.5
(2.6)
A 		1.3
(-3)
A 		8.1
(-2)
A 		41
B 1.7
(-3)
A 		12.5
(0.3)
A 		21.4
(3)
A 		12.7
(0.4)
A 		3.1
(-2.6)
A 		3.2
(-2.5)
A 		20
C 1.9
(-3)
A 		22.9
(3)
A 		14.1
(0.5)
A 		22.2
(2.8)
A 		17.2
(1.4)
A 		5.3
(-2)
A 		21
avr 15.2
(0) 		12.8
(-0.7) 		12.5
(-0.8) 		24.8
(3) 		7.2
(-2.5) 		5.5
(-3) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 2.4
(-2.3)
A 		10.1
(3)
A 		1.3
(-3)
A 		6.9
(0.8)
A 		9
B 3.3
(-1.4)
A 		0.9
(-3)
A 		7.9
(1.7)
A 		9.9
(3)
A 		9
C 1.7
(-2.7)
A 		1.2
(-3)
A 		8.4
(2)
A 		9.8
(3)
A 		9
avr 2.5
(-3) 		4.1
(-1.5) 		5.9
(0.2) 		8.9
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 7.7
(1.6)
A 		1.1
(-2.6)
A 		0.4
(-3)
A 		10
(3)
A 		0.4
(-3)
A 		2
(-2)
A 		10
B 0.6
(-3)
A 		4.2
(1.7)
A 		5.2
(3)
A 		3.4
(0.7)
A 		1.3
(-2.1)
A 		1.2
(-2.2)
A 		5
C 0.7
(-3)
A 		7
(3)
A 		3.6
(-0.2)
A 		4.5
(0.6)
A 		5.6
(1.7)
A 		1.8
(-2)
A 		6
avr 3
(-1.2) 		4.1
(0.3) 		3.1
(-1) 		6
(3) 		2.4
(-2) 		1.7
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185538_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16891
Sequence Type Exemplar sequence
Representative Public ID F55E10.2 NCBI
Target Description F55E10.2 /REP_DB=WormBase Gene ID /WP=CE02782 /TR=Q20838 /GB=AAC46531.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077012(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077012 NCBI Caenorhabditis elegans F55E10.2 (F55E10.2) mRNA, complete cds. 11/11 None
GENEFINDER00000011822 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8340631:8342224:1 11/11 None
F55E10.2 ENSEMBL cdna:known chromosome:CEL140:X:8340631:8340924:1 gene:F55E10.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8340629-8340923(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F55E10.2
Entrez Gene 186311 Entrez gene
SwissProt Q20838 EMBL-EBI
WormBase CE02782 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC46530 Hypothetical protein F55E10.1 [Caenorhabditis elegans] ref|NP_509414.1| F55E10.1 [Caenorhabditis elegans] 5.0E-43
blast AAC46531 Hypothetical protein F55E10.2 [Caenorhabditis elegans] ref|NP_509413.1| F55E10.2 [Caenorhabditis elegans] 8.0E-42
blast AAC46531 Hypothetical protein F55E10.2 [Caenorhabditis elegans] ref|NP_509413.1| F55E10.2 [Caenorhabditis elegans] 8.0E-38
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_509413.1 1 27-49
F55E10.2 1 27-49
GENEFINDER00000011822 2 27-49,120-142
Sequence
Target Sequence 
>C. ELEGANS:185538_AT
tctctaccctaaaaacaaactcacttggaggaaccgaagcagacctcaccaacctactca
acgccaatatccatcatatggtgcttatccttactgtactctcccttcttcttctctggt
tgtgctctgcattttgcaaagaaacaaacaaggctgctgctgaaaacttggttaaaattc
actataaccatcagtttgactgggttgctgagataggcactggacttcctttaagtggat
ttttacgcaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTCTACCCTAAAAACAAACTCACT 520 591 23 Antisense
AACTCACTTGGAGGAACCGAAGCAG 208 137 40 Antisense
GAGGAACCGAAGCAGACCTCACCAA 258 403 50 Antisense
TATGGTGCTTATCCTTACTGTACTC 248 655 99 Antisense
CTCTGGTTGTGCTCTGCATTTTGCA 365 231 136 Antisense
AAAGAAACAAACAAGGCTGCTGCTG 410 123 160 Antisense
GGCTGCTGCTGAAAACTTGGTTAAA 626 539 174 Antisense
TTCACTATAACCATCAGTTTGACTG 117 687 200 Antisense
GTTTGACTGGGTTGCTGAGATAGGC 317 451 216 Antisense
GATAGGCACTGGACTTCCTTTAAGT 450 425 234 Antisense
TCCTTTAAGTGGATTTTTACGCAGA 252 583 249 Antisense
Sequence Source Affymetrix Proprietary Database