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[185537_at]

Description F41E6.11 /REP_DB=WormBase Gene ID /WP=CE10264 /TR=O16463 /GB=AAB65959.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 95      6grp_high1_10_10 > 69      4grp_high_8_8 > 46      6grp_highest_nonorm > 84      6grp_total > 79      4grp_total > 49      6grp_highest_sub > Cu      6grp_high1_sub > Cu      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2105
1 2 3 4 range
A 86.4
(-2.9)
P 		2124.3
(3)
P 		1911.1
(2.4)
P 		58.4
(-3)
A 		2066
B 100.2
(-2.9)
P 		2089.5
(3)
P 		1994.7
(2.7)
P 		67.9
(-3)
P 		2022
C 123.9
(-2.9)
P 		2163.3
(3)
P 		1663.6
(1.6)
P 		92.9
(-3)
P 		2070
avr 103.5
(-2.9) 		2125.7
(3) 		1856.5
(2.2) 		73.1
(-3) 		2053

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 771
1 2 3 4 5 6 range
A 550.4
(-1.6)
P 		987.3
(2.1)
P 		387.4
(-3)
P 		431.2
(-2.6)
P 		707.7
(-0.3)
P 		1096
(3)
P 		709
B 579.8
(-0.9)
P 		890.1
(2.5)
P 		458.4
(-2.2)
P 		381.7
(-3)
P 		623.5
(-0.4)
P 		939.1
(3)
P 		557
C 481.8
(-1.3)
P 		869.6
(3)
P 		543.2
(-0.6)
P 		325.1
(-3)
P 		734.2
(1.5)
P 		835.5
(2.6)
P 		545
avr 537.3
(-1.4) 		915.7
(2.6) 		463
(-2.1) 		379.3
(-3) 		688.5
(0.2) 		956.9
(3) 		578
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 614
1 2 3 4 range
A 31.5
(-2.7)
P 		461.1
(2.5)
P 		499.6
(3)
P 		8.5
(-3)
A 		491
B 32
(-2.8)
P 		516.1
(3)
P 		462.2
(2.4)
P 		14.5
(-3)
P 		502
C 41
(-2.7)
P 		622
(3)
P 		579.8
(2.6)
P 		15.7
(-3)
P 		606
avr 34.8
(-2.7) 		533.1
(3) 		513.9
(2.8) 		12.9
(-3) 		520

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 286
1 2 3 4 5 6 range
A 101.5
(-2.6)
P 		351.1
(3)
P 		84.4
(-3)
P 		109.4
(-2.4)
P 		213.5
(-0.1)
P 		266.8
(1.1)
P 		267
B 201.7
(-0.6)
P 		296.3
(1.7)
P 		111.3
(-2.8)
P 		101.1
(-3)
P 		253.3
(0.7)
P 		350.2
(3)
P 		249
C 178.6
(0.2)
P 		265.3
(2.6)
P 		138.3
(-1)
P 		65.4
(-3)
P 		237.6
(1.8)
P 		279.7
(3)
P 		214
avr 160.6
(-1.1) 		304.2
(3) 		111.3
(-2.5) 		92
(-3) 		234.8
(1) 		298.9
(2.9) 		212
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185537_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12021
Sequence Type Exemplar sequence
Representative Public ID F41E6.11 NCBI
Target Description F41E6.11 /REP_DB=WormBase Gene ID /WP=CE10264 /TR=O16463 /GB=AAB65959.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072823(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072823 NCBI Caenorhabditis elegans F41E6.11 (F41E6.11) mRNA, complete cds. 11/11 None
SNAP00000009428 ENSEMBL cdna:SNAP chromosome:CEL140:V:8622612:8623884:-1 11/11 None
GENEFINDER00000009446 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:8622612:8624482:-1 11/11 None
F41E6.11 ENSEMBL cdna:known chromosome:CEL140:V:8622612:8623901:-1 gene:F41E6.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8622612-8623885(-) 71.92 100.0
Public Domain and Genome References
Gene Title
Ensembl F41E6.11
Entrez Gene 179245 Entrez gene
SwissProt O16463 EMBL-EBI
WormBase CE10264 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB65959 Hypothetical protein F41E6.11 [Caenorhabditis elegans] ref|NP_505224.1| F41E6.11 [Caenorhabditis elegans] 5.0E-19
blast AAB65959 Hypothetical protein F41E6.11 [Caenorhabditis elegans] ref|NP_505224.1| F41E6.11 [Caenorhabditis elegans] 6.0E-19
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000009446 1 13-35
Sequence
Target Sequence 
>C. ELEGANS:185537_AT
ttacgagccatatgcatgcgctgccccaccatgcccaccaccgactccagtctatgagcc
atatgcctgtgccgctccaccatgcccagctccagttgcccctcaaccagtgatccaaca
tgttccagtaccagtcccagttcaagttccagtcccaatccgtgttccagtcccagttcc
agtcccaactccagtctaccaaccaacatactgcgctgtcccaccatgcccagctccagc
tgccactccagtctacgctcaaccagctccaagaccaatgccagtctatgctccagctcc
agcctgtgctcaaccaccatgcccagcttacaacccatacggataccaaggaactccagg
atatgctccagcttacaacccatactcatatgtgcttagatctccagtcgctgctgctcc
aggatatgctcaaggatacgctccagcatacgctcagggatacgctccagcatatgctcc
atcttatgctccagcttatgccccatctccattcagaagagccatgtaccttttgggatc
caa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTACGAGCCATATGCATGCGCTGCC 456 683 357 Antisense
CACCGACTCCAGTCTATGAGCCATA 339 201 395 Antisense
TCTACCAACCAACATACTGCGCTGT 556 613 551 Antisense
AAGACCAATGCCAGTCTATGCTCCA 177 155 627 Antisense
CCCAGCTTACAACCCATACGGATAC 561 257 678 Antisense
CATATGTGCTTAGATCTCCAGTCGC 89 215 743 Antisense
GCTGCTGCTCCAGGATATGCTCAAG 296 297 766 Antisense
TCAAGGATACGCTCCAGCATACGCT 405 633 786 Antisense
AGCATACGCTCAGGGATACGCTCCA 187 79 801 Antisense
TCCATCTTATGCTCCAGCTTATGCC 397 591 834 Antisense
GAGCCATGTACCTTTTGGGATCCAA 663 383 875 Antisense
Sequence Source Affymetrix Proprietary Database