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[185536_at]

Description F26D10.11 /REP_DB=WormBase Gene ID /WP=CE19811 /TR=Q9XVU1 /GB=CAB02318.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 41      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 175
1 2 3 4 range
A 44.9
(-3)
A 		154.3
(1.2)
A 		203
(3)
A 		96.3
(-1)
A 		158
B 33.4
(-2.7)
A 		150.8
(3)
A 		139.2
(2.4)
A 		27.9
(-3)
A 		123
C 48.8
(-3)
A 		187.2
(3)
A 		120.2
(0.1)
A 		127
(0.4)
A 		138
avr 42.4
(-3) 		164.1
(3) 		154.1
(2.5) 		83.7
(-1) 		122

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 140
1 2 3 4 5 6 range
A 54.9
(-0.8)
A 		108.6
(3)
A 		95.3
(2)
A 		31.9
(-2.5)
A 		106.8
(2.9)
A 		24.8
(-3)
A 		84
B 82.1
(-1.5)
A 		144.1
(3)
A 		141.6
(2.8)
A 		63.2
(-2.9)
A 		61.3
(-3)
A 		61.3
(-3)
A 		83
C 66.2
(-2)
A 		165
(3)
A 		47.1
(-3)
A 		107.6
(0.1)
A 		51.9
(-2.8)
A 		62.8
(-2.2)
A 		118
avr 67.7
(-1.8) 		139.2
(3) 		94.7
(0) 		67.6
(-1.8) 		73.3
(-1.4) 		49.6
(-3) 		90
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 16.3
(-2.7)
A 		33.5
(-0)
A 		53.1
(3)
A 		14.1
(-3)
A 		39
B 10.7
(-2.1)
A 		37.2
(3)
A 		32.3
(2.1)
A 		5.9
(-3)
A 		31
C 16.2
(-3)
A 		53.8
(3)
A 		41.9
(1.1)
A 		21.4
(-2.2)
A 		38
avr 14.4
(-2.9) 		41.5
(2.8) 		42.4
(3) 		13.8
(-3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 44
1 2 3 4 5 6 range
A 10.1
(-2.2)
A 		38.6
(3)
A 		20.8
(-0.3)
A 		8.1
(-2.6)
A 		32.2
(1.8)
A 		6
(-3)
A 		33
B 28.6
(-0.7)
A 		48
(3)
A 		34.4
(0.4)
A 		16.7
(-3)
A 		24.9
(-1.4)
A 		22.9
(-1.8)
A 		31
C 24.5
(-1)
A 		50.3
(3)
A 		12
(-3)
A 		21.6
(-1.5)
A 		16.8
(-2.2)
A 		21
(-1.6)
A 		38
avr 21.1
(-1.9) 		45.6
(3) 		22.4
(-1.6) 		15.5
(-3) 		24.6
(-1.2) 		16.6
(-2.8) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185536_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.9395
Sequence Type Exemplar sequence
Representative Public ID F26D10.11 NCBI
Target Description F26D10.11 /REP_DB=WormBase Gene ID /WP=CE19811 /TR=Q9XVU1 /GB=CAB02318.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070665(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070665 NCBI Caenorhabditis elegans F26D10.11 (F26D10.11) mRNA, complete cds. 11/11 None
SNAP00000006840 ENSEMBL cdna:SNAP chromosome:CEL140:IV:17275593:17276719:1 9/11 None
GENEFINDER00000006848 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:17275593:17276719:1 10/11 None
F26D10.11 ENSEMBL cdna:known chromosome:CEL140:IV:17275593:17276719:1 gene:F26D10.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:17275598-17276725(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F26D10.11
Entrez Gene 184971 Entrez gene
SwissProt Q9XVU1 EMBL-EBI
WormBase CE19811 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.9162.1.S1_AT similar to HMGIC fusion partner-like protein 4 cfa
MOUSE430_2:1442043_AT lipoma HMGIC fusion partner-like protein 4 mm
MOE430B:1442043_AT lipoma HMGIC fusion partner-like protein 4 mm
MG-U74BV2:105902_AT lipoma HMGIC fusion partner-like protein 4 mm
MG-U74BV2:116433_AT lipoma HMGIC fusion partner-like protein 4 mm
MOE430B:1436553_AT lipoma HMGIC fusion partner-like protein 4 mm
MOUSE430_2:1436553_AT lipoma HMGIC fusion partner-like protein 4 mm
RAE230B:1395649_AT lipoma HMGIC fusion partner-like protein 4 rn
RAT230_2:1395649_AT lipoma HMGIC fusion partner-like protein 4 rn
RAE230B:1377958_AT lipoma HMGIC fusion partner-like protein 4 rn
RAT230_2:1377958_AT lipoma HMGIC fusion partner-like protein 4 rn
Protein Similarities
Method ID Description E-Value
blast CAB02318 Hypothetical protein F26D10.11 [Caenorhabditis elegans] ref|NP_503066.1| F26D10.11 [Caenorhabditis elegans] 1.0E-120
blast CAB02318 Hypothetical protein F26D10.11 [Caenorhabditis elegans] ref|NP_503066.1| F26D10.11 [Caenorhabditis elegans] 1.0E-117
blast CAE57486 Hypothetical protein CBG00455 [Caenorhabditis briggsae] 1.0E-116
blast CAE57486 Hypothetical protein CBG00455 [Caenorhabditis briggsae] 1.0E-114
blast CAB02318 Hypothetical protein F26D10.11 [Caenorhabditis elegans] ref|NP_503066.1| F26D10.11 [Caenorhabditis elegans] 1.0E-108
blast CAE57486 Hypothetical protein CBG00455 [Caenorhabditis briggsae] 1.0E-104
blast NP_808431 lipoma HMGIC fusion partner-like protein 4 [Mus musculus] dbj|BAC32729.1| unnamed protein product [Mus musculus] 5.0E-23
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503066.1 4 21-43,82-104,111-133,160-182
F26D10.11 4 21-43,82-104,111-133,160-182
SNAP00000006840 3 21-43,85-107,134-156
GENEFINDER00000006848 4 21-43,81-103,110-132,165-187
Sequence
Target Sequence 
>C. ELEGANS:185536_AT
cattggctctgatacatcccacatggattggaagtgatgaaggcggttattttgggttat
atgactactgtggaaccagtgaatgtccatggagcccgtttagagttcgaccactcagta
tgtggtttgaaatttcagcgtttttggtgctagcagccactgttttaagttttttggcaa
tattttcaattttgctcctggtgcttcttcgagatcgtcacgcttttattttatgttcct
ggcttcacttttttgcctttgtcttcatgctcgccggatgcgtcctctacccatacggct
gggagaatccacgtgtccgtgagatttgcgaatcgaaaaagtatcaactaggcctgtgcc
aaatccgttggccatacttattggctatggtgctcgtgtttgaccagttgtgtctgtgct
gtctaggattcgcgttggcacttaaaaaaccaccaaagattccagaactgagctcattga
caggaccaactgtaatcagcaacaccattcaaccggtccctcgtccacgtaaaatgtccc
tccaagactctttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATTGGCTCTGATACATCCCACATG 4 217 116 Antisense
TGGAGCCCGTTTAGAGTTCGACCAC 500 547 205 Antisense
TTTCAATTTTGCTCCTGGTGCTTCT 540 673 299 Antisense
CTTCTTCGAGATCGTCACGCTTTTA 446 221 319 Antisense
TTTATGTTCCTGGCTTCACTTTTTT 64 675 345 Antisense
CACTTTTTTGCCTTTGTCTTCATGC 374 197 361 Antisense
TACGGCTGGGAGAATCCACGTGTCC 317 647 409 Antisense
AACTAGGCCTGTGCCAAATCCGTTG 337 139 461 Antisense
GTGCTCGTGTTTGACCAGTTGTGTC 489 479 505 Antisense
GTGTCTGTGCTGTCTAGGATTCGCG 298 487 525 Antisense
AAAATGTCCCTCCAAGACTCTTTCT 37 133 646 Antisense
Sequence Source Affymetrix Proprietary Database