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[185535_at] 7TM chemoreceptor, srw family

Description Y46H3C.3 /REP_DB=WormBase Gene ID /WP=CE24314 /TR=Q9N4W0 /GB=AAF60625.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 34      4grp_total > 07      6grp_cgc > 71      6grp_cgc_sub > 03      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 25.7
(3)
A 		18.4
(0.3)
A 		9.4
(-3)
A 		10.2
(-2.7)
A 		16
B 28.6
(3)
A 		20.7
(1.1)
A 		3.8
(-2.9)
A 		3.4
(-3)
A 		25
C 6.7
(-3)
A 		7.3
(-2.9)
A 		43.2
(3)
A 		41.4
(2.7)
A 		37
avr 20.3
(3) 		15.5
(-3) 		18.8
(1.1) 		18.3
(0.5) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 27.5
(3)
A 		2.2
(-3)
A 		23.8
(2.1)
A 		3.9
(-2.6)
A 		6
(-2.1)
A 		3.8
(-2.6)
A 		25
B 10.4
(-1.9)
A 		27.6
(1.1)
A 		38.2
(3)
A 		24.7
(0.6)
A 		4.3
(-3)
A 		8
(-2.3)
A 		34
C 27.6
(1.1)
A 		38.9
(3)
A 		18.2
(-0.5)
A 		3.5
(-3)
A 		3.6
(-3)
A 		7.2
(-2.4)
A 		35
avr 21.8
(1.7) 		22.9
(2) 		26.7
(3) 		10.7
(-1.3) 		4.6
(-3) 		6.3
(-2.5) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 9.3
(3)
A 		4
(-1.1)
A 		2.5
(-2.2)
A 		1.5
(-3)
A 		8
B 9.1
(3)
A 		5.1
(0.1)
A 		0.9
(-2.9)
A 		0.7
(-3)
A 		8
C 2.2
(-3)
A 		2.1
(-3)
A 		15.1
(3)
A 		7
(-0.7)
A 		13
avr 6.9
(3) 		3.7
(-2.1) 		6.2
(1.9) 		3.1
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 5.1
(2.9)
A 		0.8
(-3)
A 		5.2
(3)
A 		1
(-2.7)
A 		1.8
(-1.6)
A 		0.9
(-2.9)
A 		4
B 3.6
(-1.6)
A 		9.2
(2.9)
A 		9.3
(3)
A 		6.5
(0.8)
A 		1.8
(-3)
A 		3
(-2)
A 		8
C 10.2
(2.1)
A 		11.9
(3)
A 		4.6
(-0.9)
A 		0.7
(-3)
A 		1.2
(-2.7)
A 		2.4
(-2.1)
A 		11
avr 6.3
(1.9) 		7.3
(3) 		6.4
(2.1) 		2.7
(-1.8) 		1.6
(-3) 		2.1
(-2.5) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185535_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15380
Sequence Type Exemplar sequence
Representative Public ID Y46H3C.3 NCBI
Target Description Y46H3C.3 /REP_DB=WormBase Gene ID /WP=CE24314 /TR=Q9N4W0 /GB=AAF60625.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071085(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071085 NCBI Caenorhabditis elegans Serpentine Receptor, class W family member (srw-90) (srw-90) mRNA, complete cds. 11/11 None
Y46H3C.3 ENSEMBL cdna:known chromosome:CEL140:V:1701880:1703882:1 gene:Y46H3C.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000038926 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1701879-1703882(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srw family
Gene Symbol srw-90
Ensembl Y46H3C.3
Entrez Gene 189966 Entrez gene
SwissProt Q9N4W0 EMBL-EBI
WormBase CE24314 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60625 Serpentine receptor, class w protein 90 [Caenorhabditis elegans] ref|NP_503486.1| Serpentine Receptor, class W family member (srw-90) [Caenorhabditis elegans] 0.0
blast AAP31433 Serpentine receptor, class w protein 89 [Caenorhabditis elegans] ref|NP_001024046.1| Serpentine Receptor, class W family member (srw-89) [Caenorhabditis elegans] 3.0E-87
blast CAE62444 Hypothetical protein CBG06536 [Caenorhabditis briggsae] 2.0E-85
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503486.1 6 21-43,58-80,149-171,219-241,270-292,312-334
Y46H3C.3 6 21-43,58-80,149-171,219-241,270-292,312-334
Sequence
Target Sequence 
>C. ELEGANS:185535_AT
aggttactttgactgcattcttcatcagttttgccttcacaatctccttctacctacacg
tggaaaatgttcaaattggagtttggaaaccggatgtccagtgctcacatagcacacaaa
ttgaagagattcccgtgtatgctcagcaatacaattcattattcttaatgaacgattata
tacttggtaggatacgaatgttcatagaggccgtatttgcaaagctgattccatgcttta
cattaccatttttaaatgttctattgatctacggaatgagaaaatccaattcgtctacag
ttgaaatagcagcgacaaataaaaacttgagaaactcaaaaaaagatcgtacaacgattt
ttatcatttttgtagcgacatcgttttttatatccgagtttccgttaggaattgccgatt
tgtatactgcaatttggcttaaagaagcccagtttcgaaaacttgctcaaaatactgtgc
ttctatgtgattcactatttactgtgaacgcttcaattcactgtgtcgtatgcttttcaa
tgtcacta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGTTACTTTGACTGCATTCTTCAT 195 55 467 Antisense
TTCTTCATCAGTTTTGCCTTCACAA 198 691 484 Antisense
TCTCCTTCTACCTACACGTGGAAAA 686 609 509 Antisense
TGGAAACCGGATGTCCAGTGCTCAC 539 547 550 Antisense
AGAGATTCCCGTGTATGCTCAGCAA 641 67 591 Antisense
GAGGCCGTATTTGCAAAGCTGATTC 588 405 673 Antisense
GTAGCGACATCGTTTTTTATATCCG 344 457 838 Antisense
GAAGCCCAGTTTCGAAAACTTGCTC 706 341 910 Antisense
AAATACTGTGCTTCTATGTGATTCA 172 117 936 Antisense
GAACGCTTCAATTCACTGTGTCGTA 461 347 972 Antisense
TGTCGTATGCTTTTCAATGTCACTA 317 557 990 Antisense
Sequence Source Affymetrix Proprietary Database