[Home] | [Total List]

[185534_at]

Description F35D11.9 /REP_DB=WormBase Gene ID /WP=CE02722 /TR=Q20038 /GB=AAA68755.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 18      4grp_total > 44      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 26.1
(3)
A 		15.7
(-0.4)
A 		8.1
(-2.9)
A 		7.8
(-3)
A 		18
B 2.8
(-3)
A 		27.2
(3)
A 		3.8
(-2.8)
A 		23.7
(2.1)
A 		24
C 14.7
(0.4)
A 		3.4
(-2.8)
A 		23.9
(3)
A 		2.6
(-3)
A 		21
avr 14.5
(1.7) 		15.4
(3) 		11.9
(-2.3) 		11.4
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 29.8
(3)
A 		13.2
(-0.8)
A 		19.1
(0.5)
A 		3.9
(-3)
A 		24.8
(1.8)
A 		10
(-1.6)
A 		26
B 27.7
(3)
A 		21.3
(1.5)
A 		7.8
(-1.6)
A 		15.2
(0.1)
A 		1.9
(-3)
A 		2.7
(-2.8)
A 		26
C 17.3
(3)
A 		1.3
(-3)
A 		7.8
(-0.6)
A 		8.3
(-0.4)
A 		4.3
(-1.9)
A 		12.1
(1.1)
A 		16
avr 24.9
(3) 		11.9
(-1.7) 		11.6
(-1.8) 		9.1
(-2.7) 		10.3
(-2.3) 		8.3
(-3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 9.5
(3)
A 		3.4
(-1.4)
A 		2.1
(-2.3)
A 		1.1
(-3)
A 		8
B 0.9
(-3)
A 		6.7
(3)
A 		0.9
(-3)
A 		5.1
(1.3)
A 		6
C 4.9
(0.4)
A 		1
(-2.5)
A 		8.3
(3)
A 		0.4
(-3)
A 		8
avr 5.1
(3) 		3.7
(0.1) 		3.8
(0.3) 		2.2
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 5.5
(1.2)
A 		4.7
(0.4)
A 		4.2
(-0)
A 		1
(-3)
A 		7.5
(3)
A 		2.4
(-1.7)
A 		7
B 9.6
(3)
A 		7.1
(1.3)
A 		1.9
(-2.3)
A 		4
(-0.8)
A 		0.8
(-3)
A 		1
(-2.9)
A 		9
C 6.4
(3)
A 		0.4
(-3)
A 		2
(-1.4)
A 		1.7
(-1.7)
A 		1.4
(-2)
A 		4.1
(0.7)
A 		6
avr 7.2
(3) 		4.1
(-0.7) 		2.7
(-2.4) 		2.2
(-3) 		3.2
(-1.8) 		2.5
(-2.6) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185534_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5623
Sequence Type Exemplar sequence
Representative Public ID F35D11.9 NCBI
Target Description F35D11.9 /REP_DB=WormBase Gene ID /WP=CE02722 /TR=Q20038 /GB=AAA68755.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062414(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062414 NCBI Caenorhabditis elegans F35D11.9 (F35D11.9) mRNA, complete cds. 11/11 None
SNAP00000013543 ENSEMBL cdna:SNAP chromosome:CEL140:II:4618915:4621728:-1 11/11 None
GENEFINDER00000013556 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:4617206:4619787:-1 10/11 None
F35D11.9 ENSEMBL cdna:known chromosome:CEL140:II:4618915:4619787:-1 gene:F35D11.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4618913-4619786(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F35D11.9
Entrez Gene 185282 Entrez gene
SwissProt Q20038 EMBL-EBI
WormBase CE02722 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA68754 Hypothetical protein F35D11.8 [Caenorhabditis elegans] ref|NP_494814.1| F35D11.8 [Caenorhabditis elegans] 1.0E-130
blast AAA68755 Hypothetical protein F35D11.9 [Caenorhabditis elegans] ref|NP_494815.1| F35D11.9 [Caenorhabditis elegans] 1.0E-125
blast AAA68756 Hypothetical protein F35D11.10 [Caenorhabditis elegans] 1.0E-125
blast NP_494816 F35D11.10 [Caenorhabditis elegans] 1.0E-120
blast AAA68755 Hypothetical protein F35D11.9 [Caenorhabditis elegans] ref|NP_494815.1| F35D11.9 [Caenorhabditis elegans] 1.0E-104
blast AAA68755 Hypothetical protein F35D11.9 [Caenorhabditis elegans] ref|NP_494815.1| F35D11.9 [Caenorhabditis elegans] 1.0E-103
blast AAA68754 Hypothetical protein F35D11.8 [Caenorhabditis elegans] ref|NP_494814.1| F35D11.8 [Caenorhabditis elegans] 4.0E-67
blast AAA68753 Hypothetical protein F35D11.7 [Caenorhabditis elegans] ref|NP_494813.2| F35D11.7 [Caenorhabditis elegans] 8.0E-47
Sequence
Target Sequence 
>C. ELEGANS:185534_AT
tgtgggaaatcgtgaccgagcccgctcagtctgtctctatcataacgcttcgctgagcaa
tccagaaaattcacatgaacttgagattgtttctgacgttattcgcgcacggaacatttc
cctcccgattgcactcgacggacaactctctccaagatgcaaggcccttattttcagagg
cgaacagagccaacaatattttgaccaaagaacagaggaaggagattgcaatattaacaa
tcatttgtttgtatatgatgatatcaatacagatactttatttatccgttccaaactagg
tacttcggctggaactaatggaggatactccagtcaggaggacggagtaaaatttcgttt
caccagagattgtaacgcattaacagatgcatactattacttttctaatggaacacattt
ctatgcggtagatggacgaactgaattgctcggatgctttggggaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTGGGAAATCGTGACCGAGCCCGC 52 555 165 Antisense
CTCAGTCTGTCTCTATCATAACGCT 431 229 189 Antisense
ATAACGCTTCGCTGAGCAATCCAGA 320 25 206 Antisense
GATTGTTTCTGACGTTATTCGCGCA 265 435 249 Antisense
TTATTCGCGCACGGAACATTTCCCT 23 679 263 Antisense
CTCTCCAAGATGCAAGGCCCTTATT 574 229 312 Antisense
AGGCCCTTATTTTCAGAGGCGAACA 198 41 326 Antisense
ACAGATACTTTATTTATCCGTTCCA 177 107 433 Antisense
CGTTCCAAACTAGGTACTTCGGCTG 562 243 451 Antisense
AAATTTCGTTTCACCAGAGATTGTA 242 115 514 Antisense
GAATTGCTCGGATGCTTTGGGGAAA 4 323 607 Antisense
Sequence Source Affymetrix Proprietary Database