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[185533_at]

Description Y48D7A.1 /REP_DB=WormBase Gene ID /WP=CE22156 /TR=Q9N4V1 /GB=AAF60677.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 0      4grp_total > 35      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 26
(3)
A 		18.7
(1.1)
A 		18.4
(1)
A 		3
(-3)
A 		23
B 28.1
(-1.4)
A 		47.6
(3)
A 		33.8
(-0.1)
A 		20.8
(-3)
A 		27
C 17.5
(-1.9)
A 		56.5
(1)
A 		2.3
(-3)
A 		84.1
(3)
M 		82
avr 23.9
(-1.5) 		40.9
(3) 		18.2
(-3) 		36
(1.7) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 17.9
(0.2)
A 		3.6
(-2.7)
A 		3.8
(-2.7)
A 		17.2
(0.1)
A 		31.3
(3)
A 		2.3
(-3)
A 		29
B 4.7
(-3)
A 		35.2
(1.8)
A 		42.5
(3)
A 		27.8
(0.7)
A 		16.5
(-1.1)
A 		23.8
(0)
A 		38
C 6.5
(-3)
A 		50.7
(3)
A 		6.6
(-3)
A 		8.6
(-2.7)
A 		13.1
(-2.1)
A 		18.1
(-1.4)
A 		44
avr 9.7
(-3) 		29.8
(3) 		17.6
(-0.6) 		17.9
(-0.6) 		20.3
(0.2) 		14.7
(-1.5) 		20
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 9.5
(3)
A 		4.1
(-0.6)
A 		4.8
(-0.1)
A 		0.4
(-3)
A 		9
B 9
(0.7)
A 		11.8
(3)
A 		7.8
(-0.2)
A 		4.4
(-3)
A 		7
C 5.8
(-1.1)
A 		16.2
(3)
A 		0.8
(-3)
A 		14.2
(2.2)
M 		15
avr 8.1
(0.5) 		10.7
(3) 		4.5
(-3) 		6.3
(-1.3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 3.3
(-1.2)
A 		1.3
(-2.5)
A 		0.8
(-2.9)
A 		4.4
(-0.4)
A 		9.4
(3)
A 		0.6
(-3)
A 		9
B 1.6
(-3)
A 		11.7
(3)
A 		10.3
(2.2)
A 		7.4
(0.4)
A 		6.7
(0)
A 		8.9
(1.3)
A 		10
C 2.4
(-2.7)
A 		15.5
(3)
A 		1.7
(-3)
A 		1.7
(-3)
A 		4.3
(-1.9)
A 		6
(-1.1)
A 		14
avr 2.4
(-3) 		9.5
(3) 		4.3
(-1.4) 		4.5
(-1.2) 		6.8
(0.7) 		5.2
(-0.6) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185533_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18167
Sequence Type Exemplar sequence
Representative Public ID Y48D7A.1 NCBI
Target Description Y48D7A.1 /REP_DB=WormBase Gene ID /WP=CE22156 /TR=Q9N4V1 /GB=AAF60677.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076112(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076112 NCBI Caenorhabditis elegans Y48D7A.1 (Y48D7A.1) mRNA, complete cds. 11/11 None
SNAP00000042915 ENSEMBL cdna:SNAP chromosome:CEL140:X:3009490:3010166:1 11/11 None
GENEFINDER00000042918 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3009490:3010886:1 11/11 None
Y48D7A.1 ENSEMBL cdna:known chromosome:CEL140:X:3009490:3010166:1 gene:Y48D7A.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3009489-3010166(+) 94.91 100.0
Public Domain and Genome References
Gene Title
Ensembl Y48D7A.1
Entrez Gene 190024 Entrez gene
SwissProt Q9N4V1 EMBL-EBI
WormBase CE22156 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_508513 Y48D7A.1 [Caenorhabditis elegans] gb|AAF60677.1| Hypothetical protein Y48D7A.1 [Caenorhabditis elegans] 3.0E-78
blast NP_508513 Y48D7A.1 [Caenorhabditis elegans] gb|AAF60677.1| Hypothetical protein Y48D7A.1 [Caenorhabditis elegans] 3.0E-75
blast CAA94163 Hypothetical protein R04D3.3 [Caenorhabditis elegans] ref|NP_510210.1| R04D3.3 [Caenorhabditis elegans] 2.0E-22
blast CAA94162 Hypothetical protein R04D3.2 [Caenorhabditis elegans] ref|NP_510208.1| R04D3.2 [Caenorhabditis elegans] 2.0E-21
Sequence
Target Sequence 
>C. ELEGANS:185533_AT
taatactcgtagcgctgccgatgttggcttttgccatacacattgattgttctgaagaaa
gtacatttttttatttcgacaatgagtacaatttattcttatccgtccaaaatgttaccg
aagttaatcgatacatcgccttcaaagtcgacacgaatgctgatgagacaacaaaatata
tgatttgcgtgcaacaccacatgcaatgcttgcaagccaacgttgaaactcctgataaag
tagtcattaacaaaaagaaaccctctggtcaggttcgatatcttggaaagaacaactttc
tctgttcatttgcctcttcagattttccgaacattttccaaaagaagaaacagctactcg
tctcgaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAATACTCGTAGCGCTGCCGATGTT 354 635 26 Antisense
GCCGATGTTGGCTTTTGCCATACAC 694 283 42 Antisense
GTACAATTTATTCTTATCCGTCCAA 371 457 111 Antisense
TATCCGTCCAAAATGTTACCGAAGT 314 565 125 Antisense
GATACATCGCCTTCAAAGTCGACAC 689 423 155 Antisense
GATTTGCGTGCAACACCACATGCAA 699 427 207 Antisense
GCAAGCCAACGTTGAAACTCCTGAT 486 319 237 Antisense
GAAACCCTCTGGTCAGGTTCGATAT 143 359 282 Antisense
AACAACTTTCTCTGTTCATTTGCCT 438 135 316 Antisense
TCATTTGCCTCTTCAGATTTTCCGA 135 621 331 Antisense
GAAGAAACAGCTACTCGTCTCGAAA 122 341 369 Antisense
Sequence Source Affymetrix Proprietary Database