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[185532_at]

Description Y38E10A.2 /REP_DB=WormBase Gene ID /WP=CE21582 /TR=Q9NAK8 /GB=CAB54393.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 21      4grp_total > 42      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 62
1 2 3 4 range
A 20.2
(-3)
A 		47
(1.1)
A 		59.6
(3)
A 		51.8
(1.8)
A 		39
B 58
(-0.9)
A 		81.7
(3)
A 		49.8
(-2.2)
A 		45.1
(-3)
A 		37
C 39.2
(-3)
A 		72.2
(3)
A 		45.7
(-1.8)
A 		59.2
(0.6)
A 		33
avr 39.1
(-3) 		67
(3) 		51.7
(-0.3) 		52
(-0.2) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 8.9
(-2.8)
A 		37.8
(-0.6)
A 		84.6
(3)
A 		26.7
(-1.4)
A 		18.2
(-2.1)
A 		5.9
(-3)
A 		79
B 20.8
(0.3)
A 		25
(1.1)
A 		3.8
(-3)
A 		9.8
(-1.8)
A 		35.1
(3)
A 		5.8
(-2.6)
A 		31
C 30
(1.1)
A 		42.1
(3)
A 		32.7
(1.5)
A 		5.7
(-2.7)
A 		35.4
(1.9)
A 		4
(-3)
A 		38
avr 19.9
(-0.5) 		35
(2.1) 		40.4
(3) 		14.1
(-1.5) 		29.6
(1.2) 		5.2
(-3) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 7.4
(-3)
A 		10.2
(-1)
A 		15.6
(3)
A 		7.6
(-2.9)
A 		8
B 18.5
(2)
A 		20.2
(3)
A 		11.5
(-1.9)
A 		9.6
(-3)
A 		11
C 13
(-1.3)
A 		20.8
(3)
A 		15.9
(0.3)
A 		10
(-3)
A 		11
avr 13
(-0.1) 		17.1
(3) 		14.3
(0.9) 		9.1
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 1.6
(-2.9)
A 		13.4
(1.2)
A 		18.4
(3)
A 		6.8
(-1.1)
A 		5.5
(-1.6)
A 		1.4
(-3)
A 		17
B 7.2
(-0.2)
A 		8.3
(0.3)
A 		0.9
(-3)
A 		2.6
(-2.2)
A 		14.2
(3)
A 		2.2
(-2.4)
A 		13
C 11.1
(2.1)
A 		12.8
(3)
A 		8.3
(0.7)
A 		1.2
(-3)
A 		11.5
(2.3)
A 		1.3
(-2.9)
A 		12
avr 6.6
(0) 		11.5
(3) 		9.2
(1.6) 		3.5
(-1.8) 		10.4
(2.3) 		1.6
(-3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185532_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2648
Sequence Type Exemplar sequence
Representative Public ID Y38E10A.2 NCBI
Target Description Y38E10A.2 /REP_DB=WormBase Gene ID /WP=CE21582 /TR=Q9NAK8 /GB=CAB54393.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064284(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064284 NCBI Caenorhabditis elegans Y38E10A.2 (Y38E10A.2) mRNA, complete cds. 11/11 None
GENEFINDER00000017462 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12571592:12573430:-1 11/11 None
Y38E10A.2 ENSEMBL cdna:known chromosome:CEL140:II:12571592:12573430:-1 gene:Y38E10A.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000017424 8/11 Cross Hyb Matching Probes None
SNAP00000017425 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12571588-12573427(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y38E10A.2
Entrez Gene 189653 Entrez gene
SwissProt Q9NAK8 EMBL-EBI
WormBase CE21582 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54393 Hypothetical protein Y38E10A.2 [Caenorhabditis elegans] ref|NP_496685.1| Y38E10A.2 [Caenorhabditis elegans] 1.0E-166
Sequence
Target Sequence 
>C. ELEGANS:185532_AT
agcttactggctggtcgagaacgatgctacaaccaccaccccgcctatggcttggaattt
tgagtgcacgtatccaatgatgtcaacacagcaagcttcgtacaacacattaaagcatta
cgacaattttgcattgaagccgattctttttggcggcaacgattctactgctgactattc
tggagagacatggagagacccgtgctatcatcgattttatgcacagaatgcaacatatgt
gatttactggcaggtcgaaaacgatgctacaactcctttggcttggaacttcaggacttt
attcccaggaattgggacacaacaaacgtggtacgacaaatttcaatattacgacaattt
tgcattgaagccgatactttttgccggcaatgattctactgctgactattctggagaaac
atggagagatccatgctatcatcggctctatgcgcagccaaacgcgacatttgtggttta
ctggcaggtcgagaacgatatgtattgcgaagttatgcgtcgtacctgttgtctcactgt
aacgccttccttcgaggcccgatacttgaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCTTACTGGCTGGTCGAGAACGAT 592 77 210 Antisense
CACCCCGCCTATGGCTTGGAATTTT 54 201 246 Antisense
ACACAGCAAGCTTCGTACAACACAT 670 109 295 Antisense
ACGATTCTACTGCTGACTATTCTGG 456 93 368 Antisense
CATGGAGAGACCCGTGCTATCATCG 109 209 398 Antisense
GAAAACGATGCTACAACTCCTTTGG 621 353 466 Antisense
ATGATTCTACTGCTGACTATTCTGG 620 45 599 Antisense
AGAGATCCATGCTATCATCGGCTCT 120 67 634 Antisense
CTCTATGCGCAGCCAAACGCGACAT 172 231 655 Antisense
GAAGTTATGCGTCGTACCTGTTGTC 465 337 718 Antisense
TTCCTTCGAGGCCCGATACTTGACA 312 699 756 Antisense
Sequence Source Affymetrix Proprietary Database