[Home] | [Total List]

[185529_at]

Description C33E10.8 /REP_DB=WormBase Gene ID /WP=CE17494 /TR=O61798 /GB=AAC16980.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 12      4grp_total > 36      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 122
1 2 3 4 range
A 99.4
(3)
A 		36.7
(-1.8)
A 		69.9
(0.7)
A 		20.9
(-3)
A 		79
B 70.8
(3)
A 		58.7
(1.8)
A 		8.8
(-3)
A 		41
(0.1)
A 		62
C 6.2
(-3)
A 		105.2
(1.9)
A 		7.6
(-2.9)
A 		128.6
(3)
A 		122
avr 58.8
(1.7) 		66.9
(3) 		28.8
(-3) 		63.5
(2.5) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 108
1 2 3 4 5 6 range
A 52.4
(0.6)
A 		57
(1)
A 		10.7
(-2.6)
A 		82.6
(3)
A 		9.7
(-2.7)
A 		6.2
(-3)
A 		76
B 57.4
(0.5)
A 		71.4
(3)
A 		64.7
(1.8)
A 		39.8
(-2.6)
A 		37.4
(-3)
A 		68.3
(2.5)
A 		34
C 61.8
(-1.2)
A 		113.9
(3)
A 		62.6
(-1.2)
A 		46.3
(-2.5)
A 		39.9
(-3)
A 		51.2
(-2.1)
A 		74
avr 57.2
(0.3) 		80.8
(3) 		46
(-1) 		56.2
(0.2) 		29
(-3) 		41.9
(-1.5) 		52
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 36.2
(3)
A 		8
(-2.1)
A 		18.3
(-0.2)
A 		3.1
(-3)
A 		33
B 22.6
(3)
A 		14.5
(0.6)
A 		2
(-3)
A 		8.7
(-1)
A 		21
C 2.1
(-3)
A 		30.2
(3)
A 		2.6
(-2.9)
A 		21.7
(1.2)
A 		28
avr 20.3
(3) 		17.6
(1.7) 		7.6
(-3) 		11.2
(-1.3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 9.7
(-0.5)
A 		20.3
(2.8)
A 		2.3
(-2.8)
A 		21
(3)
A 		2.9
(-2.6)
A 		1.5
(-3)
A 		20
B 20
(0.8)
A 		23.8
(2.3)
A 		15.7
(-0.9)
A 		10.5
(-3)
A 		15.2
(-1.1)
A 		25.5
(3)
A 		15
C 22.9
(0.2)
A 		34.8
(3)
A 		15.9
(-1.4)
A 		9.3
(-3)
A 		12.9
(-2.2)
A 		17.1
(-1.2)
A 		26
avr 17.5
(-0.3) 		26.3
(3) 		11.3
(-2.6) 		13.6
(-1.8) 		10.3
(-3) 		14.7
(-1.4) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185529_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17974
Sequence Type Exemplar sequence
Representative Public ID C33E10.8 NCBI
Target Description C33E10.8 /REP_DB=WormBase Gene ID /WP=CE17494 /TR=O61798 /GB=AAC16980.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078404(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078404 NCBI Caenorhabditis elegans C33E10.8 (C33E10.8) mRNA, complete cds. 11/11 None
SNAP00000003537 ENSEMBL cdna:SNAP chromosome:CEL140:X:17293030:17293740:-1 11/11 None
GENEFINDER00000003547 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:17293030:17294449:-1 11/11 None
C33E10.8 ENSEMBL cdna:known chromosome:CEL140:X:17293030:17294449:-1 gene:C33E10.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:17293029-17294449(-) 99.11 100.0
Public Domain and Genome References
Gene Title
Ensembl C33E10.8
Entrez Gene 183164 Entrez gene
SwissProt O61798 EMBL-EBI
WormBase CE35420 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC16980 Hypothetical protein C33E10.8 [Caenorhabditis elegans] ref|NP_510805.2| C33E10.8 [Caenorhabditis elegans] 1.0E-164
blast AAC16980 Hypothetical protein C33E10.8 [Caenorhabditis elegans] ref|NP_510805.2| C33E10.8 [Caenorhabditis elegans] 1.0E-159
blast AAC16980 Hypothetical protein C33E10.8 [Caenorhabditis elegans] ref|NP_510805.2| C33E10.8 [Caenorhabditis elegans] 1.0E-135
Sequence
Target Sequence 
>C. ELEGANS:185529_AT
gacttaccgctgatcagttgttcaagaaactggctccgtttttaagaaaacttccaaaaa
gcatcactatcaccgagtcaagcgatgattgcttttattttttccgagaattgattggag
tcaggttccatagaatcacacttcagacgtccaacctcaacttcaggagaatcggaaaat
ggcttattttaatgatcaacaactgcaacgagctggtgctcacggtcgataatttgccaa
cctcgtttcgaaaccaagttttttgcagaaacttggagtttctattaattggcccaagtt
tctcaatcaaatacaatgattttcttctgttcaacacttctagaatcgagatgaacaatg
aaatgatgccggaaacagtgaagttatacgtgactttgtggatcaagggtgctaatggac
aacttagctcgctccgtgtgaagctatacaatcggctgtacaggaacactgaccagtttt
tttttgttttgctagttgattacatgtttgctggttttgaaaaagaaggacgacaagatt
acagtgttcaaaacattgccggaaagactgctcttggatcgctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTTACCGCTGATCAGTTGTTCAA 290 371 410 Antisense
GCATCACTATCACCGAGTCAAGCGA 36 309 470 Antisense
TGATTGCTTTTATTTTTTCCGAGAA 17 565 495 Antisense
TAGAATCACACTTCAGACGTCCAAC 52 653 540 Antisense
ACGTCCAACCTCAACTTCAGGAGAA 238 93 556 Antisense
CAACGAGCTGGTGCTCACGGTCGAT 619 187 615 Antisense
GATAATTTGCCAACCTCGTTTCGAA 167 421 637 Antisense
GAGTTTCTATTAATTGGCCCAAGTT 573 397 685 Antisense
TAATGGACAACTTAGCTCGCTCCGT 603 635 822 Antisense
GCTCGCTCCGTGTGAAGCTATACAA 546 299 836 Antisense
CGGAAAGACTGCTCTTGGATCGCTC 76 243 969 Antisense
Sequence Source Affymetrix Proprietary Database