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[185528_at]

Description ZK1193.3 /REP_DB=WormBase Gene ID /WP=CE05128 /TR=Q23410 /GB=AAA83292.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 56      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 17.5
(-3)
A 		45.1
(0.2)
A 		45.1
(0.2)
A 		68.5
(3)
A 		51
B 49.2
(3)
A 		36.7
(1.4)
A 		45.1
(2.5)
A 		2.5
(-3)
A 		47
C 45.6
(0.9)
A 		21.2
(-1.5)
A 		67.1
(3)
A 		6
(-3)
A 		61
avr 37.4
(-0.4) 		34.3
(-1.1) 		52.4
(3) 		25.7
(-3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 6.6
(-2.6)
A 		61.5
(3)
A 		2.7
(-3)
A 		2.8
(-3)
A 		28.7
(-0.3)
A 		23.9
(-0.8)
A 		59
B 21.5
(-0.7)
A 		34.4
(0.8)
A 		52.8
(3)
A 		42.4
(1.8)
A 		6.4
(-2.5)
A 		2.2
(-3)
A 		51
C 45.9
(1.2)
A 		64.8
(3)
A 		61.5
(2.7)
A 		8.2
(-2.4)
A 		15.5
(-1.7)
A 		2.2
(-3)
A 		63
avr 24.7
(-0.9) 		53.6
(3) 		39
(1) 		17.8
(-1.9) 		16.9
(-2) 		9.4
(-3) 		44
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 6.4
(-3)
A 		9.8
(0.8)
A 		11.8
(3)
A 		10
(1)
A 		5
B 15.7
(3)
A 		9.1
(0.4)
A 		10.4
(0.9)
A 		0.5
(-3)
A 		15
C 15.1
(0.8)
A 		6.1
(-1.6)
A 		23.4
(3)
A 		1
(-3)
A 		22
avr 12.4
(1.5) 		8.3
(-0.6) 		15.2
(3) 		3.8
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 1.2
(-2.8)
A 		21.9
(3)
A 		0.6
(-3)
A 		0.7
(-3)
A 		8.7
(-0.7)
A 		5.8
(-1.5)
A 		21
B 7.5
(0.4)
A 		11.4
(2.3)
A 		12.8
(3)
A 		11.2
(2.2)
A 		2.6
(-2.1)
A 		0.8
(-3)
A 		12
C 17
(2.1)
A 		19.8
(3)
A 		15.6
(1.7)
A 		1.6
(-2.7)
A 		5
(-1.6)
A 		0.7
(-3)
A 		19
avr 8.6
(-0.6) 		17.7
(3) 		9.7
(-0.1) 		4.5
(-2.2) 		5.4
(-1.8) 		2.4
(-3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185528_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18360
Sequence Type Exemplar sequence
Representative Public ID ZK1193.3 NCBI
Target Description ZK1193.3 /REP_DB=WormBase Gene ID /WP=CE05128 /TR=Q23410 /GB=AAA83292.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075698(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075698 NCBI Caenorhabditis elegans ZK1193.3 (ZK1193.3) mRNA, complete cds. 11/11 None
GENEFINDER00000031657 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:406575:420361:-1 9/11 None
ZK1193.3 ENSEMBL cdna:known chromosome:CEL140:X:417482:420361:-1 gene:ZK1193.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000031649 4/11 Cross Hyb Matching Probes None
SNAP00000031650 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:417481-420361(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1193.3
Entrez Gene 191530 Entrez gene
SwissProt Q23410 EMBL-EBI
WormBase CE05128 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA83292 Hypothetical protein ZK1193.3 [Caenorhabditis elegans] ref|NP_508099.1| ZK1193.3 [Caenorhabditis elegans] 0.0
blast CAE63665 Hypothetical protein CBG08167 [Caenorhabditis briggsae] 0.0
blast AAA83291 Hypothetical protein ZK1193.2 [Caenorhabditis elegans] ref|NP_508098.1| ZK1193.2 [Caenorhabditis elegans] 0.0
blast CAE63666 Hypothetical protein CBG08168 [Caenorhabditis briggsae] 0.0
blast AAA81430 Hypothetical protein F40F4.6 [Caenorhabditis elegans] ref|NP_508552.1| F40F4.6 [Caenorhabditis elegans] 9.0E-28
Protein Domains
Database ID Description E-Value
scop a.1.1.Globins All alpha proteins; Globin-like; Globin-like; Globins 4.0
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 3.5E-10
Sequence
Target Sequence 
>C. ELEGANS:185528_AT
aaagcgccaatgtttcagcctttttttgtggatcaatcaattgactttttgactctcaga
gcttccggattcataatatttatcaaacaatggacgatttcagcaaatctctccccaata
ctaacgttgcctaataatacgcaattatctccacaacttttctactcaaatggtgatttt
tatgtgtggcggaccgaaaaaccaccagttggagcatatttcttaaacatcaacacaaac
agttctcacaactcattttgccaatatcgtttaatgggaagatccacctaccggctctat
acatctgtcaccgataacattggcacggacgacacctatcatgcccccgtctatcaaacc
acatctcatttggtagcaagaatggattctctctaccttgacgatccgctcgacacaact
cttgaagctgttgtttggttcaatggtaagattgtaaatatgcatactttttttccaaaa
tgtagaaacaaatatattgcaatacaatttcacagaccctcaaaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGCGCCAATGTTTCAGCCTTTTT 423 125 865 Antisense
TTGACTCTCAGAGCTTCCGGATTCA 28 701 913 Antisense
TCTCCCCAATACTAACGTTGCCTAA 159 609 974 Antisense
ATACGCAATTATCTCCACAACTTTT 79 23 1001 Antisense
AACAGTTCTCACAACTCATTTTGCC 481 137 1102 Antisense
TAATGGGAAGATCCACCTACCGGCT 18 633 1136 Antisense
TACCGGCTCTATACATCTGTCACCG 274 649 1153 Antisense
TAACATTGGCACGGACGACACCTAT 275 637 1179 Antisense
AAGAATGGATTCTCTCTACCTTGAC 623 151 1242 Antisense
TCCGCTCGACACAACTCTTGAAGCT 104 597 1269 Antisense
ATACAATTTCACAGACCCTCAAACA 334 23 1366 Antisense
Sequence Source Affymetrix Proprietary Database