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[185525_at]

Description C03G6.14 /REP_DB=WormBase Gene ID /WP=CE07888 /TR=O02627 /GB=AAB52314.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 32      6grp_cgc > 82      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 23.7
(0.5)
A 		14.5
(-3)
A 		25.1
(1)
A 		30.4
(3)
A 		16
B 5.3
(-3)
A 		26
(0.2)
A 		44.5
(3)
A 		11
(-2.1)
A 		39
C 8.2
(-1.9)
A 		3.7
(-2.9)
A 		3
(-3)
A 		31.6
(3)
A 		29
avr 12.4
(-3) 		14.7
(-1.8) 		24.2
(2.9) 		24.3
(3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 21.1
(3)
A 		9.9
(-0.4)
A 		12.2
(0.3)
A 		6.7
(-1.4)
A 		5.3
(-1.9)
A 		1.6
(-3)
A 		20
B 1.4
(-3)
A 		40.8
(3)
A 		37.1
(2.4)
A 		27.1
(0.9)
A 		1.6
(-3)
A 		13.4
(-1.2)
A 		39
C 3
(-3)
A 		9.3
(-2)
A 		41.8
(3)
A 		3.8
(-2.9)
A 		4.4
(-2.8)
A 		13.4
(-1.4)
A 		39
avr 8.5
(-1.9) 		20
(0.7) 		30.4
(3) 		12.5
(-1) 		3.8
(-3) 		9.5
(-1.7) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 8.6
(3)
A 		3.1
(-3)
A 		6.6
(0.8)
A 		4.5
(-1.5)
A 		6
B 1.7
(-3)
A 		6.4
(0.3)
A 		10.3
(3)
A 		2.3
(-2.6)
A 		9
C 2.7
(-0.7)
A 		1.1
(-3)
A 		1.1
(-3)
A 		5.3
(3)
A 		4
avr 4.3
(-1.1) 		3.5
(-3) 		6
(3) 		4
(-1.8) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 3.9
(3)
A 		3.5
(2.3)
A 		2.6
(0.8)
A 		1.7
(-0.8)
A 		1.6
(-0.9)
A 		0.4
(-3)
A 		4
B 0.5
(-3)
A 		13.6
(3)
A 		9
(0.9)
A 		7.2
(0.1)
A 		0.6
(-3)
A 		5
(-0.9)
A 		13
C 1.1
(-2.8)
A 		2.8
(-1.8)
A 		10.6
(3)
A 		0.8
(-3)
A 		1.4
(-2.6)
A 		4.5
(-0.7)
A 		10
avr 1.8
(-2.4) 		6.6
(2.2) 		7.4
(3) 		3.2
(-1.1) 		1.2
(-3) 		3.3
(-1) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185525_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11783
Sequence Type Exemplar sequence
Representative Public ID C03G6.14 NCBI
Target Description C03G6.14 /REP_DB=WormBase Gene ID /WP=CE07888 /TR=O02627 /GB=AAB52314.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072478
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C03G6.14 ENSEMBL cdna:known chromosome:CEL140:V:7362590:7364356:-1 gene:C03G6.14 None
GENEFINDER00000031565 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:7362573:7364356:-1 None
NM_072478 NCBI Caenorhabditis elegans CYtochrome P450 family member (cyp-35A1) (cyp-35A1) mRNA, complete cds. None
SNAP00000031555 ENSEMBL cdna:SNAP chromosome:CEL140:V:7362573:7363923:-1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7361821-7364357(-) 96.52 100.0
Public Domain and Genome References
Gene Title
Gene Symbol cyp-35A1
Ensembl C03G6.14
Entrez Gene 182176 Entrez gene
SwissProt O02627 EMBL-EBI
WormBase CE36781 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4497 monooxygenase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB52314 Cytochrome p450 family protein 35A1 [Caenorhabditis elegans] ref|NP_504879.2| CYtochrome P450 family member (cyp-35A1) [Caenorhabditis elegans] 0.0
blast AAB52315 Cytochrome p450 family protein 35A2 [Caenorhabditis elegans] ref|NP_504880.2| CYtochrome P450 family member (cyp-35A2) [Caenorhabditis elegans] 0.0
blast AAF39921 Cytochrome p450 family protein 35A3 [Caenorhabditis elegans] ref|NP_504121.1| CYtochrome P450 family member (cyp-35A3) [Caenorhabditis elegans] 0.0
blast AAK18902 Hypothetical protein C49G7.8 [Caenorhabditis elegans] ref|NP_504124.1| CYtochrome P450 family member (cyp-35A4) [Caenorhabditis elegans] 0.0
blast AAF39921 Cytochrome p450 family protein 35A3 [Caenorhabditis elegans] ref|NP_504121.1| CYtochrome P450 family member (cyp-35A3) [Caenorhabditis elegans] 1.0E-173
blast AAB52315 Cytochrome p450 family protein 35A2 [Caenorhabditis elegans] ref|NP_504880.2| CYtochrome P450 family member (cyp-35A2) [Caenorhabditis elegans] 1.0E-172
blast AAK18902 Hypothetical protein C49G7.8 [Caenorhabditis elegans] ref|NP_504124.1| CYtochrome P450 family member (cyp-35A4) [Caenorhabditis elegans] 1.0E-168
Protein Families
Method ID Description E-Value
p450 CPA2_RAT Animalia; CYP2A2; rat; CPA2_RAT; Rattus sp.; P15149 1.0E-112
p450 CP1B_MOUSE Animalia; CYP1B-1; mou; CP1B_MOUSE; Mus musculus; Q64429 1.0E-108
p450 CP1B_MOUSE Animalia; CYP1B-1; mou; CP1B_MOUSE; Mus musculus; Q64429 1.0E-134
Protein Domains
Database ID Description E-Value
Pfam IPR001128 EMBL-EBI Cytochrome P450 7.0E-19
Pfam IPR001128 EMBL-EBI Cytochrome P450 2.2E-38
Pfam IPR001128 EMBL-EBI Cytochrome P450 9.7E-61
Pfam IPR001128 EMBL-EBI Cytochrome P450 2.4E-20
Pfam IPR001128 EMBL-EBI Cytochrome P450 3.0E-56
Sequence
Target Sequence 
>C. ELEGANS:185525_AT
gatttacacaactactcctacatccagaagttatggttaaagcaagagaagaaatactaa
aaataacggaaaatggctctcgacatcttagccttactgatcgtacctcaactccttatt
tgaatgcaatgattggagaaattcaacgtcatgcatcaatccttaatgtcagcttctgga
aaatcaataaagagctcacatacatgggaggtcaccccgtcgatgctggagctctggtta
ctgctcagctgagcgccttgcatgtgaacgatactattttcaaaaacccgcaggagtttg
atccggaaagattcattcgcgatgaggaacttttgcaaaaagtgattccatttggagttg
gcaaacgctcgtgcattggagaatcattggctagagctgagttatatttgatttccttac
tatgcatctgtggcacctccaacaaaagctttctacataagtatcttcccctatggaaca
gtgtagctttattattaccggttaaactttcccgcccagccttcgcagcacttataagct
ctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTTACACAACTACTCCTACATCC 37 429 758 Antisense
ATCAATCCTTAATGTCAGCTTCTGG 290 27 912 Antisense
GCTGGAGCTCTGGTTACTGCTCAGC 254 295 982 Antisense
CTGGTTACTGCTCAGCTGAGCGCCT 132 241 991 Antisense
GAGCGCCTTGCATGTGAACGATACT 110 387 1008 Antisense
GATACTATTTTCAAAAACCCGCAGG 367 421 1027 Antisense
ACCCGCAGGAGTTTGATCCGGAAAG 103 89 1043 Antisense
TGGAGTTGGCAAACGCTCGTGCATT 409 547 1110 Antisense
GCTGAGTTATATTTGATTTCCTTAC 437 293 1153 Antisense
CCTTACTATGCATCTGTGGCACCTC 464 269 1172 Antisense
GCCTTCGCAGCACTTATAAGCTCTC 4 283 1276 Antisense
Sequence Source Affymetrix Proprietary Database