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[185523_s_at]

Description Y24F12A.2 /REP_DB=WormBase Gene ID /WP=CE24193 /TR=Q9TVH6 /GB=CAB60328.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 48      6grp_high1_10_10 > 83      4grp_highest_8_8 > 01      4grp_high_8_8 > 45      6grp_highest_nonorm > 56      6grp_total > 74      4grp_total > 51      6grp_high1_sub > 04      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1829
1 2 3 4 range
A 2446.5
(-1.7)
P 		3810.9
(3)
P 		2530.6
(-1.4)
P 		2060.5
(-3)
P 		1750
B 2137.9
(-1.9)
P 		2664.4
(3)
P 		2637.6
(2.8)
P 		2019.4
(-3)
P 		645
C 2310.8
(-0.5)
P 		2618
(1.9)
P 		2757.7
(3)
P 		1981.6
(-3)
P 		776
avr 2298.4
(-1.4) 		3031.1
(3) 		2642
(0.7) 		2020.5
(-3) 		1011

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 751
1 2 3 4 5 6 range
A 2145.8
(-1.2)
P 		1996.3
(-3)
P 		2355.5
(1.4)
P 		2483.5
(3)
P 		2178.1
(-0.8)
P 		2381.1
(1.7)
P 		487
B 1732.2
(-3)
P 		1840.5
(-1.8)
P 		2129.2
(1.3)
P 		2273.6
(2.9)
P 		2186.2
(1.9)
P 		2287.3
(3)
P 		555
C 1945.2
(-2.6)
P 		1904.8
(-3)
P 		2375.7
(2.2)
P 		2438.9
(2.9)
P 		2398.6
(2.5)
P 		2444.7
(3)
P 		540
avr 1941.1
(-2.7) 		1913.9
(-3) 		2286.8
(1.6) 		2398.7
(3) 		2254.3
(1.2) 		2371
(2.7) 		485
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 660
1 2 3 4 range
A 890.8
(3)
P 		827.3
(2.4)
P 		661.5
(0.7)
P 		301.6
(-3)
P 		589
B 681.8
(3)
P 		658
(2.4)
P 		611.2
(1.3)
P 		430.3
(-3)
P 		252
C 765
(1.1)
P 		752.7
(1)
P 		961.2
(3)
P 		334.1
(-3)
P 		627
avr 779.2
(3) 		746
(2.5) 		744.6
(2.5) 		355.3
(-3) 		424

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 493
1 2 3 4 5 6 range
A 395.6
(-3)
P 		710
(3)
P 		513
(-0.8)
P 		629.9
(1.5)
P 		657.3
(2)
P 		579.7
(0.5)
P 		314
B 602.7
(-1.6)
P 		612.6
(-1.5)
P 		517
(-3)
P 		602.2
(-1.6)
P 		888.2
(3)
P 		852.9
(2.4)
P 		371
C 721
(1.2)
P 		581.2
(-1.3)
P 		604.7
(-0.9)
P 		490.5
(-3)
P 		776.2
(2.2)
P 		818.4
(3)
P 		328
avr 573.1
(-2.3) 		634.6
(-0.6) 		544.9
(-3) 		574.2
(-2.2) 		773.9
(3) 		750.3
(2.4) 		229
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185523_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10247
Sequence Type Exemplar sequence
Representative Public ID Y24F12A.2 NCBI
Target Description Y24F12A.2 /REP_DB=WormBase Gene ID /WP=CE24193 /TR=Q9TVH6 /GB=CAB60328.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069786(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069786 NCBI Caenorhabditis elegans Y24F12A.2 (Y24F12A.2) mRNA, complete cds. 11/11 None
Y24F12A.2 ENSEMBL cdna:known chromosome:CEL140:IV:11603644:11604894:-1 gene:Y24F12A.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000037632 8/11 Cross Hyb Matching Probes None
GENEFINDER00000037640 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11603663-11604900(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y24F12A.2
Entrez Gene 178084 Entrez gene
SwissProt Q9TVH6 EMBL-EBI
WormBase CE24193 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.16786.1.S1_AT similar to Ras-related GTP binding D cfa
CANINE_2:CFA.17644.1.S1_S_AT similar to Ras-related GTP binding D cfa
CHICKEN:GGA.15760.1.S1_AT similar to Ras-related GTP binding D; Rag D protein gga
CHICKEN:GGAAFFX.24771.1.S1_AT similar to Ras-related GTP binding D; Rag D protein gga
HG-U95AV2:32963_S_AT Ras-related GTP binding D hs
HG-U133A:221524_S_AT Ras-related GTP binding D hs
HG-U133_PLUS_2:221524_S_AT Ras-related GTP binding D hs
HG-U133A_2:221524_S_AT Ras-related GTP binding D hs
HU35KSUBA:RC_AA235295_AT Ras-related GTP binding D hs
HU35KSUBB:RC_H08840_S_AT Ras-related GTP binding D hs
HU35KSUBC:RC_N71456_AT Ras-related GTP binding D hs
HU35KSUBD:RC_H99738_AT Ras-related GTP binding D hs
U133_X3P:G11181619_3P_A_AT Ras-related GTP binding D hs
U133_X3P:HS.238679.0.S2_3P_A_AT Ras-related GTP binding D hs
HG-U133A_2:221523_S_AT Ras-related GTP binding D hs
HG-FOCUS:221523_S_AT Ras-related GTP binding D hs
HG-U133_PLUS_2:221523_S_AT Ras-related GTP binding D hs
HG-U133A:221523_S_AT Ras-related GTP binding D hs
HG-U95B:42986_AT Ras-related GTP binding D hs
HG-U95B:43961_S_AT Ras-related GTP binding D hs
HG-U95C:61627_AT Ras-related GTP binding D hs
MOUSE430A_2:1431164_AT Ras-related GTP binding D mm
MOE430A:1431164_AT Ras-related GTP binding D mm
MOUSE430_2:1431164_AT Ras-related GTP binding D mm
MU11KSUBA:AA028446_S_AT Ras-related GTP binding D mm
MG-U74AV2:93614_AT Ras-related GTP binding D mm
MG-U74BV2:115106_AT Ras-related GTP binding D mm
MOE430B:1434909_AT Ras-related GTP binding D mm
MOUSE430_2:1434909_AT Ras-related GTP binding D mm
MOE430B:1440555_AT Ras-related GTP binding D mm
MOUSE430_2:1440555_AT Ras-related GTP binding D mm
MU19KSUBC:TC37259_AT Ras-related GTP binding D, mRNA (cDNA clone IMAGE:1349177) mm
MU19KSUBC:TC37259_G_AT Ras-related GTP binding D, mRNA (cDNA clone IMAGE:1349177) mm
MU19KSUBC:TC37260_S_AT Ras-related GTP binding D, mRNA (cDNA clone IMAGE:1349177) mm
MU19KSUBC:TC37261_AT Ras-related GTP binding D, mRNA (cDNA clone IMAGE:1349177) mm
RG-U34B:RC_AA851192_AT Ras-related GTP binding D (predicted) rn
RAE230A:1373427_AT Ras-related GTP binding D (predicted) rn
RAT230_2:1373427_AT Ras-related GTP binding D (predicted) rn
YEAST_2:1775278_AT Cytoplasmic GTP binding protein, negative regulator of the Ran/Tc4 GTPase cycle downstream of Gtr1p; homolog of human RagC and RagD proteins; component of the EGO complex, which is involved in the regulation of microautophagy Sc
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
5737 cytoplasm inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB60290 Hypothetical protein Y24F12A.2 [Caenorhabditis elegans] emb|CAB60328.1| Hypothetical protein Y24F12A.2 [Caenorhabditis elegans] ref|NP_502187.1| Y24F12A.2 [Caenorhabditis elegans] 0.0
blast CAE62091 Hypothetical protein CBG06117 [Caenorhabditis briggsae] 0.0
blast XP_694085 PREDICTED: similar to Ras-related GTP binding C [Danio rerio] 2.0E-88
Protein Domains
Database ID Description E-Value
Pfam IPR006762 EMBL-EBI Gtr1/RagA G protein 2.8E-116
Sequence
Target Sequence 
>C. ELEGANS:185523_S_AT
cttcaagtcacgtatcatctcacctccatttatgatcactctattttcgaggcgttttcc
aaagtcgtccaaaatctcgtcaagcaactgccaacactcgagcgtcttctagacgtattt
aacaatagctctaaagttactaaatcattcctgtttgatattctctcaaaaatctacatt
gcaaccgattcggagccagtggaaatgagcatttacgagttatgctgtgatatgatcgat
gtcactttggatttgtcatccatatacggagttgccgagaatggctcaaactacgatgaa
cgatcctcctcagtgatccgtctcaagtcagaacaagtgatgttcctccgtcaagtcaac
aagcatcttgccctcgtttttatcatgaaagaagatggaaacgaaaaagccggttttatc
gatcacaacttcggtgtcttcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTCAAGTCACGTATCATCTCACCT 614 219 535 Antisense
ATCTCACCTCCATTTATGATCACTC 290 33 551 Antisense
ATGATCACTCTATTTTCGAGGCGTT 254 47 566 Antisense
TCGAGGCGTTTTCCAAAGTCGTCCA 11 603 581 Antisense
AAGTCGTCCAAAATCTCGTCAAGCA 83 159 596 Antisense
TCGTCAAGCAACTGCCAACACTCGA 128 605 611 Antisense
ATCTACATTGCAACCGATTCGGAGC 498 29 706 Antisense
AAACTACGATGAACGATCCTCCTCA 580 127 822 Antisense
TGATGTTCCTCCGTCAAGTCAACAA 228 565 872 Antisense
TCTTGCCCTCGTTTTTATCATGAAA 708 617 900 Antisense
TCGATCACAACTTCGGTGTCTTCAA 99 603 953 Antisense
Sequence Source Affymetrix Proprietary Database