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[185522_at]

Description Y106G6H.1 /REP_DB=WormBase Gene ID /WP=CE20411 /TR=Q9U301 /GB=CAB63336.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 72      6grp_high1_10_10 > 27      4grp_highest_8_8 > 13      4grp_high_8_8 > 23      6grp_highest_nonorm > 10      6grp_total > 36      4grp_total > 16      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1531
1 2 3 4 range
A 1387.7
(-3)
P 		1919.3
(-0.7)
P 		2159.4
(0.3)
P 		2787
(3)
P 		1399
B 1532.3
(-3)
P 		1753.6
(-2)
P 		2134.8
(-0.4)
P 		2918.5
(3)
P 		1386
C 1442.8
(-3)
P 		1657.5
(-1.8)
P 		2046.1
(0.3)
P 		2541.5
(3)
P 		1099
avr 1454.3
(-3) 		1776.8
(-1.5) 		2113.4
(0.1) 		2749
(3) 		1295

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1515
1 2 3 4 5 6 range
A 2212
(3)
P 		1478.5
(-0.1)
P 		953.5
(-2.2)
P 		770.3
(-3)
P 		800.8
(-2.9)
P 		1299.4
(-0.8)
P 		1442
B 2075.6
(3)
P 		1435.6
(0.2)
P 		1115.5
(-1.2)
P 		911.8
(-2.1)
P 		697.4
(-3)
P 		1360.5
(-0.1)
P 		1378
C 1612.3
(3)
P 		1388.9
(1.5)
P 		1214.4
(0.3)
P 		872.4
(-2)
P 		728.6
(-3)
P 		1319.7
(1)
P 		884
avr 1966.6
(3) 		1434.3
(0.4) 		1094.5
(-1.3) 		851.5
(-2.5) 		742.3
(-3) 		1326.5
(-0.1) 		1224
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 305
1 2 3 4 range
A 505.3
(0.7)
P 		416.6
(-2.7)
P 		564.5
(3)
P 		408
(-3)
P 		157
B 488.6
(-1.2)
P 		433.1
(-3)
P 		494.7
(-1)
P 		621.9
(3)
P 		189
C 477.6
(-2)
P 		476.6
(-2)
P 		713.1
(3)
P 		428.5
(-3)
P 		285
avr 490.5
(-1) 		442.1
(-3) 		590.8
(3) 		486.1
(-1.2) 		149

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 547
1 2 3 4 5 6 range
A 407.8
(0.9)
P 		525.8
(3)
P 		207.7
(-2.8)
P 		195.4
(-3)
P 		241.6
(-2.2)
P 		316.4
(-0.8)
P 		330
B 722.2
(3)
P 		477.9
(-0)
P 		270.9
(-2.6)
P 		241.5
(-3)
P 		283.3
(-2.5)
P 		507.3
(0.3)
P 		481
C 597.6
(3)
P 		423.8
(0.5)
P 		309.1
(-1.1)
P 		175.4
(-3)
P 		235.8
(-2.1)
P 		441.8
(0.8)
P 		422
avr 575.9
(3) 		475.8
(1.4) 		262.6
(-2.1) 		204.1
(-3) 		253.6
(-2.2) 		421.8
(0.5) 		372
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185522_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2028
Sequence Type Exemplar sequence
Representative Public ID Y106G6H.1 NCBI
Target Description Y106G6H.1 /REP_DB=WormBase Gene ID /WP=CE20411 /TR=Q9U301 /GB=CAB63336.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060325(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060325 NCBI Caenorhabditis elegans Y106G6H.1 (Y106G6H.1) mRNA, complete cds. 11/11 None
GENEFINDER00000001723 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10435791:10440405:1 11/11 None
SNAP00000001701 ENSEMBL cdna:SNAP chromosome:CEL140:I:10438059:10440405:1 11/11 None
Y106G6H.1 ENSEMBL cdna:known chromosome:CEL140:I:10437794:10440435:1 gene:Y106G6H.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10437793-10440336(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y106G6H.1
Entrez Gene 172919 Entrez gene
SwissProt Q9U301 EMBL-EBI
WormBase CE20411 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB63336 Hypothetical protein Y106G6H.1 [Caenorhabditis elegans] ref|NP_492726.1| Y106G6H.1 [Caenorhabditis elegans] 0.0
blast CAE58938 Hypothetical protein CBG02206 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000001723 1 30-52
Sequence
Target Sequence 
>C. ELEGANS:185522_AT
acatcttctctacaatcattttccaaagccaaaagcaatttgtacagctattgcgccggg
atgtgatgacgattatgcagcgagggttctaaacctgaccgaatcagtagtctgcctgga
atgtaccgcctgtatgtccatcacaaatgtgcttcaacataagatcttccttcaaccagc
catgcttgatcagacttactattggctccgcggaaaccttttccacaatttgtgtgctga
actttgtctcgcattccagggattagatattccacttttcccgcatggatttacttatga
cggatgccagaatgtgatgaaaaagaagttttatcagcttatcgacgttgcaacagttat
cactagacccgaaagattttgcagtttggagcttcaatggtgtgagctcaatgagcagcc
aaatgcacttcattgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACATCTTCTCTACAATCATTTTCCA 121 107 756 Antisense
ATTTGTACAGCTATTGCGCCGGGAT 124 17 793 Antisense
GACCGAATCAGTAGTCTGCCTGGAA 173 383 852 Antisense
CCTGGAATGTACCGCCTGTATGTCC 302 265 870 Antisense
ACATAAGATCTTCCTTCAACCAGCC 611 105 912 Antisense
ACCAGCCATGCTTGATCAGACTTAC 87 87 930 Antisense
TGATCAGACTTACTATTGGCTCCGC 554 565 942 Antisense
GTGTGCTGAACTTTGTCTCGCATTC 30 489 987 Antisense
ATATTCCACTTTTCCCGCATGGATT 202 19 1022 Antisense
ATCAGCTTATCGACGTTGCAACAGT 371 29 1088 Antisense
GAGCAGCCAAATGCACTTCATTGTC 140 389 1168 Antisense
Sequence Source Affymetrix Proprietary Database