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[185521_at]

Description Y47D9A.2 /REP_DB=WormBase Gene ID /WP=CE22072 /TR=Q9N4V4 /GB=AAF60646.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 50      6grp_high1_10_10 > 16      4grp_highest_8_8 > 52      4grp_high_8_8 > 25      6grp_highest_nonorm > 50      6grp_total > 15      4grp_total > 39      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 678
1 2 3 4 range
A 896.9
(3)
P 		407.7
(-2.4)
P 		355.9
(-3)
P 		590.6
(-0.4)
P 		541
B 872.5
(3)
P 		360.4
(-1.9)
P 		240.9
(-3)
P 		524.2
(-0.3)
P 		632
C 919.2
(3)
P 		340.4
(-2.8)
P 		319.1
(-3)
P 		427.4
(-1.9)
P 		600
avr 896.2
(3) 		369.5
(-2.3) 		305.3
(-3) 		514.1
(-0.9) 		591

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 557
1 2 3 4 5 6 range
A 633.5
(3)
P 		628
(2.9)
P 		413.1
(-0.9)
P 		293.1
(-3)
P 		297.5
(-2.9)
P 		327.6
(-2.4)
P 		340
B 715.4
(3)
P 		534.8
(0.5)
P 		416.1
(-1.2)
P 		322.2
(-2.5)
P 		282.9
(-3)
P 		317.6
(-2.5)
P 		433
C 815.9
(3)
P 		579.7
(0.5)
P 		482.3
(-0.6)
P 		341.6
(-2.1)
P 		303.7
(-2.5)
P 		258.5
(-3)
P 		557
avr 721.6
(3) 		580.8
(1) 		437.2
(-1) 		319
(-2.7) 		294.7
(-3) 		301.2
(-2.9) 		427
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 271
1 2 3 4 range
A 326.5
(3)
P 		88.5
(-2.9)
P 		93
(-2.8)
P 		86.4
(-3)
P 		240
B 278.2
(3)
P 		89
(-2.1)
P 		55.8
(-3)
P 		111.7
(-1.5)
P 		222
C 304.3
(3)
P 		97.9
(-2.3)
P 		111.2
(-2)
P 		72.1
(-3)
P 		232
avr 303
(3) 		91.8
(-2.9) 		86.7
(-3) 		90.1
(-2.9) 		216

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 234
1 2 3 4 5 6 range
A 116.8
(-1.3)
P 		223.4
(3)
P 		90
(-2.4)
P 		74.3
(-3)
P 		89.8
(-2.4)
P 		79.8
(-2.8)
P 		149
B 248.9
(3)
P 		178
(0.4)
P 		101
(-2.4)
P 		85.3
(-3)
P 		115
(-1.9)
P 		118.4
(-1.8)
P 		164
C 302.4
(3)
P 		176.9
(-0.2)
P 		122.8
(-1.6)
P 		68.7
(-3)
P 		98.3
(-2.2)
P 		86.5
(-2.5)
P 		234
avr 222.7
(3) 		192.8
(1.8) 		104.6
(-1.8) 		76.1
(-3) 		101
(-2) 		94.9
(-2.2) 		147
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185521_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1407
Sequence Type Exemplar sequence
Representative Public ID Y47D9A.2 NCBI
Target Description Y47D9A.2 /REP_DB=WormBase Gene ID /WP=CE22072 /TR=Q9N4V4 /GB=AAF60646.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182054(10), NM_058947(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_182054 NCBI Caenorhabditis elegans Y47D9A.2b (Y47D9A.2) mRNA, complete cds. 10/11 None
NM_058947 NCBI Caenorhabditis elegans Y47D9A.2a (Y47D9A.2) mRNA, complete cds. 11/11 None
GENEFINDER00000009721 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4298627:4301953:1 11/11 None
SNAP00000009717 ENSEMBL cdna:SNAP chromosome:CEL140:I:4299908:4301782:1 11/11 None
Y47D9A.2b ENSEMBL cdna:known chromosome:CEL140:I:4298260:4302243:1 gene:Y47D9A.2 10/11 A 
Y47D9A.2a ENSEMBL cdna:known chromosome:CEL140:I:4298627:4302236:1 gene:Y47D9A.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4298626-4301782(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y47D9A.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAO21411 Hypothetical protein Y47D9A.2b [Caenorhabditis elegans] ref|NP_871854.1| Y47D9A.2b [Caenorhabditis elegans] 0.0
blast AAF60646 Hypothetical protein Y47D9A.2a [Caenorhabditis elegans] ref|NP_491348.1| Y47D9A.2a [Caenorhabditis elegans] 1.0E-167
blast AAF60646 Hypothetical protein Y47D9A.2a [Caenorhabditis elegans] ref|NP_491348.1| Y47D9A.2a [Caenorhabditis elegans] 1.0E-165
blast AAF60646 Hypothetical protein Y47D9A.2a [Caenorhabditis elegans] ref|NP_491348.1| Y47D9A.2a [Caenorhabditis elegans] 1.0E-163
blast AAO21411 Hypothetical protein Y47D9A.2b [Caenorhabditis elegans] ref|NP_871854.1| Y47D9A.2b [Caenorhabditis elegans] 1.0E-163
blast AAO21411 Hypothetical protein Y47D9A.2b [Caenorhabditis elegans] ref|NP_871854.1| Y47D9A.2b [Caenorhabditis elegans] 1.0E-161
Protein Domains
Database ID Description E-Value
Pfam IPR004274 EMBL-EBI NLI interacting factor 6.2E-58
Pfam IPR004274 EMBL-EBI NLI interacting factor 6.2E-58
Pfam IPR004274 EMBL-EBI NLI interacting factor 1.7E-54
Sequence
Target Sequence 
>C. ELEGANS:185521_AT
acaccacttgacaacgccacaatggtatttccagtcgtattccaaaatatcacatatcaa
gtctacgttcgtctccgaccacaccttcgcacattcttgagtcgaatggcgaaaacgttt
gaaataatcatattcactgccagcaagaaggtttatgcgaacaaactgtgtgatatcctt
gatccacggaagaatcatatcaggcatcgattgttccgagagcattgtgtttgtgtattt
gggaattatgtaaaagatttaacgattcttggaagagatccatcaaagacaatgattctt
gataatgctgttcaatcatttgcttatcaattggataatggaattcctatcgaaagttgg
tttcacgatcgaaatgataccgaattgctcaagttgtgctcttttttggaagctattccg
actttgggtcgtgatgtccgtgagattcttcgtcacaagtaccgtctccgtgaccatatc
ccattctacagcatcattcaccaacaagagggacccggtcgcttgccccttctagaagtt
gcaccaccaccagttacagagccgaatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACACCACTTGACAACGCCACAATGG 100 109 253 Antisense
ATGGTATTTCCAGTCGTATTCCAAA 570 51 274 Antisense
ACATATCAAGTCTACGTTCGTCTCC 141 105 304 Antisense
ACACCTTCGCACATTCTTGAGTCGA 69 109 333 Antisense
TGGAAGCTATTCCGACTTTGGGTCG 660 545 659 Antisense
GGTCGTGATGTCCGTGAGATTCTTC 33 503 679 Antisense
GAGATTCTTCGTCACAAGTACCGTC 494 395 694 Antisense
TATCCCATTCTACAGCATCATTCAC 331 659 729 Antisense
CAACAAGAGGGACCCGGTCGCTTGC 499 189 754 Antisense
GCTTGCCCCTTCTAGAAGTTGCACC 656 305 773 Antisense
CCACCACCAGTTACAGAGCCGAATG 402 273 796 Antisense
Sequence Source Affymetrix Proprietary Database