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[185520_s_at]

Description Y57G11C.4 /REP_DB=WormBase Gene ID /WP=CE14932 /TR=O18230 /GB=CAB16506.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 27      4grp_total > 31      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 186
1 2 3 4 range
A 247.2
(3)
M 		70.9
(-3)
A 		98.7
(-2.1)
A 		197.3
(1.3)
A 		176
B 256.7
(3)
A 		113.6
(-3)
A 		138.4
(-2)
A 		149.6
(-1.5)
A 		143
C 193.3
(3)
A 		128.7
(-3)
A 		167.9
(0.6)
A 		172.6
(1.1)
P 		65
avr 232.4
(3) 		104.4
(-3) 		135
(-1.6) 		173.2
(0.2) 		128

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 108
1 2 3 4 5 6 range
A 197.6
(-0.8)
A 		256.7
(3)
A 		237.5
(1.8)
M 		163.1
(-3)
A 		172
(-2.4)
A 		179.2
(-2)
M 		94
B 236.8
(2.8)
P 		203
(-2.5)
A 		199.5
(-3)
A 		237.9
(3)
A 		215.9
(-0.4)
A 		237.1
(2.9)
P 		38
C 264.8
(3)
P 		218.2
(0.4)
M 		201.9
(-0.5)
A 		157.1
(-3)
A 		261
(2.8)
A 		246.3
(2)
P 		108
avr 233.1
(3) 		226
(2.1) 		213
(0.4) 		186
(-3) 		216.3
(0.9) 		220.9
(1.4) 		47
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 90
(3)
M 		15.4
(-3)
A 		25.8
(-2.2)
A 		28.9
(-1.9)
A 		75
B 81.9
(3)
A 		28
(-3)
A 		32.1
(-2.5)
A 		31.9
(-2.6)
A 		54
C 64
(3)
A 		37
(-1.6)
A 		58.5
(2.1)
A 		29.1
(-3)
P 		35
avr 78.6
(3) 		26.8
(-3) 		38.8
(-1.6) 		30
(-2.6) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 36.4
(-3)
A 		91.3
(3)
A 		51.7
(-1.3)
M 		41.4
(-2.5)
A 		51.9
(-1.3)
A 		43.6
(-2.2)
M 		55
B 82.4
(2.1)
P 		67.6
(-0.1)
A 		48.5
(-3)
A 		63
(-0.8)
A 		87.7
(2.9)
A 		88.4
(3)
P 		40
C 98.1
(3)
P 		66.6
(0.2)
M 		51.4
(-1.2)
A 		31.6
(-3)
A 		84.4
(1.8)
A 		82.5
(1.6)
P 		67
avr 72.3
(2.4) 		75.2
(3) 		50.5
(-2) 		45.3
(-3) 		74.7
(2.9) 		71.5
(2.3) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185520_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10234
Sequence Type Exemplar sequence
Representative Public ID Y57G11C.4 NCBI
Target Description Y57G11C.4 /REP_DB=WormBase Gene ID /WP=CE14932 /TR=O18230 /GB=CAB16506.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070380(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070380 NCBI Caenorhabditis elegans Y57G11C.4 (Y57G11C.4) mRNA, complete cds. 11/11 None
SNAP00000003466 ENSEMBL cdna:SNAP chromosome:CEL140:IV:14765790:14766618:-1 11/11 None
GENEFINDER00000003609 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:14765790:14766618:-1 11/11 None
Y57G11C.4 ENSEMBL cdna:known chromosome:CEL140:IV:14765591:14766618:-1 gene:Y57G11C.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:14765795-14767843(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y57G11C.4
Entrez Gene 178397 Entrez gene
SwissProt O18230 EMBL-EBI
WormBase CE28871 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:249453_AT vesicle transport v-SNARE 11 (VTI11) / vesicle soluble NSF attachment protein receptor VTI1a (VTI1A) at
DROSOPHILA_2:1638927_AT dm
DROSGENOME1:154415_AT dm
U133_X3P:HS2.189575.1.S1_3P_AT vesicle transport through interaction with t-SNAREs homolog 1A (yeast) hs
U133_X3P:HS.189575.0.S1_3P_AT vesicle transport through interaction with t-SNAREs homolog 1A (yeast) hs
HG-U133_PLUS_2:1552536_AT vesicle transport through interaction with t-SNAREs homolog 1A (yeast) hs
HG-U133_PLUS_2:235923_AT vesicle transport through interaction with t-SNAREs homolog 1A (yeast) hs
HG-U133B:235923_AT vesicle transport through interaction with t-SNAREs homolog 1A (yeast) hs
HG-U95E:79091_AT vesicle transport through interaction with t-SNAREs homolog 1A (yeast) hs
HG-U133_PLUS_2:235034_AT Vesicle transport through interaction with t-SNAREs homolog 1A (yeast) hs
HG-U133B:235034_AT Vesicle transport through interaction with t-SNAREs homolog 1A (yeast) hs
HG-U133_PLUS_2:233323_AT Vesicle transport through interaction with t-SNAREs homolog 1A (yeast) hs
HG-U133B:233323_AT Vesicle transport through interaction with t-SNAREs homolog 1A (yeast) hs
HU35KSUBB:RC_W81166_AT Vesicle transport through interaction with t-SNAREs homolog 1A (yeast) hs
HU35KSUBC:RC_N64597_AT Vesicle transport through interaction with t-SNAREs homolog 1A (yeast) hs
HU35KSUBC:RC_AA424738_AT Vesicle transport through interaction with t-SNAREs homolog 1A (yeast) hs
U133_X3P:HS.306737.0.S1_3P_AT Vesicle transport through interaction with t-SNAREs homolog 1A (yeast) hs
U133_X3P:HS.158622.0.A1_3P_AT Vesicle transport through interaction with t-SNAREs homolog 1A (yeast) hs
U133_X3P:HS.120654.0.A1_3P_AT Vesicle transport through interaction with t-SNAREs homolog 1A (yeast) hs
HG-U133_PLUS_2:242356_AT Vesicle transport through interaction with t-SNAREs homolog 1A (yeast) hs
HG-U133B:242356_AT Vesicle transport through interaction with t-SNAREs homolog 1A (yeast) hs
HG-U95B:46390_AT Vesicle transport through interaction with t-SNAREs homolog 1A (yeast) hs
HG-U95C:64181_AT Vesicle transport through interaction with t-SNAREs homolog 1A (yeast) hs
HG-U95D:76246_AT Vesicle transport through interaction with t-SNAREs homolog 1A (yeast) hs
HG-U133_PLUS_2:231495_AT Vesicle transport through interaction with t-SNAREs homolog 1A (yeast) hs
HG-U133B:231495_AT Vesicle transport through interaction with t-SNAREs homolog 1A (yeast) hs
HG-U133_PLUS_2:233370_AT Vesicle transport through interaction with t-SNAREs homolog 1A (yeast) hs
HG-U133B:233370_AT Vesicle transport through interaction with t-SNAREs homolog 1A (yeast) hs
HG-U133_PLUS_2:236849_AT Vesicle transport through interaction with t-SNAREs homolog 1A (yeast) hs
HG-U133B:236849_AT Vesicle transport through interaction with t-SNAREs homolog 1A (yeast) hs
HG-U95C:51429_AT Vesicle transport through interaction with t-SNAREs homolog 1A (yeast) hs
HG-U95C:61746_AT Vesicle transport through interaction with t-SNAREs homolog 1A (yeast) hs
HG-U95D:68102_AT Vesicle transport through interaction with t-SNAREs homolog 1A (yeast) hs
HG-U95E:72511_AT Vesicle transport through interaction with t-SNAREs homolog 1A (yeast) hs
HG-U95D:75614_AT Vesicle transport through interaction with t-SNAREs homolog 1A (yeast) hs
HG-U95D:81642_AT Vesicle transport through interaction with t-SNAREs homolog 1A (yeast) hs
HG-U95D:85712_AT Vesicle transport through interaction with t-SNAREs homolog 1A (yeast) hs
HG-U95E:86221_AT Vesicle transport through interaction with t-SNAREs homolog 1A (yeast) hs
HG-U95D:87320_AT Vesicle transport through interaction with t-SNAREs homolog 1A (yeast) hs
HU35KSUBA:RC_D20225_AT Vesicle transport through interaction with t-SNAREs homolog 1A (yeast) hs
HU35KSUBD:RC_H91721_AT Vesicle transport through interaction with t-SNAREs homolog 1A (yeast) hs
U133_X3P:236849_3P_AT Vesicle transport through interaction with t-SNAREs homolog 1A (yeast) hs
U133_X3P:HS.194554.0.A1_3P_AT Vesicle transport through interaction with t-SNAREs homolog 1A (yeast) hs
U133_X3P:HS.310859.0.A1_3P_AT Vesicle transport through interaction with t-SNAREs homolog 1A (yeast) hs
U133_X3P:HS.310859.0.A1_3P_S_AT Vesicle transport through interaction with t-SNAREs homolog 1A (yeast) hs
U133_X3P:HS.310859.0.A1_3P_X_AT Vesicle transport through interaction with t-SNAREs homolog 1A (yeast) hs
MOUSE430_2:1454077_AT vesicle transport through interaction with t-SNAREs homolog 1A (yeast) mm
MOE430B:1454077_AT vesicle transport through interaction with t-SNAREs homolog 1A (yeast) mm
MOUSE430A_2:1419190_AT vesicle transport through interaction with t-SNAREs homolog 1A (yeast) mm
MOE430A:1419190_AT vesicle transport through interaction with t-SNAREs homolog 1A (yeast) mm
MOUSE430_2:1419190_AT vesicle transport through interaction with t-SNAREs homolog 1A (yeast) mm
MG-U74AV2:102635_AT vesicle transport through interaction with t-SNAREs homolog 1A (yeast) mm
MG-U74CV2:167981_I_AT vesicle transport through interaction with t-SNAREs homolog 1A (yeast) mm
MG-U74CV2:167120_R_AT vesicle transport through interaction with t-SNAREs homolog 1A (yeast) mm
MOE430A:1419189_AT vesicle transport through interaction with t-SNAREs homolog 1A (yeast) mm
MOUSE430A_2:1419189_AT vesicle transport through interaction with t-SNAREs homolog 1A (yeast) mm
MOUSE430_2:1419189_AT vesicle transport through interaction with t-SNAREs homolog 1A (yeast) mm
MOE430B:1439876_AT vesicle transport through interaction with t-SNAREs homolog 1A (yeast) mm
MOUSE430_2:1439876_AT vesicle transport through interaction with t-SNAREs homolog 1A (yeast) mm
MOE430B:1446365_AT vesicle transport through interaction with t-SNAREs homolog 1A (yeast) mm
MOUSE430_2:1446365_AT vesicle transport through interaction with t-SNAREs homolog 1A (yeast) mm
MG-U74BV2:111986_AT Vesicle transport through interaction with t-SNAREs homolog 1A (yeast), mRNA (cDNA clone MGC:30354 IMAGE:5012235) mm
MG-U74CV2:130614_AT Vesicle transport through interaction with t-SNAREs homolog 1A (yeast), mRNA (cDNA clone MGC:30354 IMAGE:5012235) mm
MG-U74CV2:136740_F_AT Vesicle transport through interaction with t-SNAREs homolog 1A (yeast), mRNA (cDNA clone MGC:30354 IMAGE:5012235) mm
MOE430B:1445374_AT Vesicle transport through interaction with t-SNAREs homolog 1A (yeast), mRNA (cDNA clone MGC:30354 IMAGE:5012235) mm
MOUSE430_2:1445374_AT Vesicle transport through interaction with t-SNAREs homolog 1A (yeast), mRNA (cDNA clone MGC:30354 IMAGE:5012235) mm
MU19KSUBA:TC19430_AT Vesicle transport through interaction with t-SNAREs homolog 1A (yeast), mRNA (cDNA clone MGC:30354 IMAGE:5012235) mm
MU19KSUBC:TC39437_AT Vesicle transport through interaction with t-SNAREs homolog 1A (yeast), mRNA (cDNA clone MGC:30354 IMAGE:5012235) mm
RAE230A:1368889_AT vesicle transport through interaction with t-SNAREs homolog 1A (yeast) rn
RAT230_2:1368889_AT vesicle transport through interaction with t-SNAREs homolog 1A (yeast) rn
RAE230B:1379980_AT Vesicle transport through interaction with t-SNAREs homolog 1A (yeast) rn
RAT230_2:1379980_AT Vesicle transport through interaction with t-SNAREs homolog 1A (yeast) rn
RG-U34B:RC_AI013985_AT Vesicle transport through interaction with t-SNAREs homolog 1A (yeast) rn
YEAST_2:1774864_AT Protein involved in cis-Golgi membrane traffic; v-SNARE that interacts with two t-SNARES, Sed5p and Pep12p; required for multiple vacuolar sorting pathways Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6886 intracellular protein transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB16506 Hypothetical protein Y57G11C.4 [Caenorhabditis elegans] ref|NP_502781.1| Y57G11C.4 [Caenorhabditis elegans] 1.0E-111
blast CAE73918 Hypothetical protein CBG21527 [Caenorhabditis briggsae] 1.0E-103
blast NP_058558 vesicle transport through interaction with t-SNAREs homolog 1A [Mus musculus] gb|AAH19386.1| Vesicle transport through interaction with t-SNAREs homolog 1A [Mus musculus] dbj|BAC26046.1| unnamed protein product [Mus musculus] dbj|BAB23532.1| unnamed protein product [Mus musculus] sp|O89116|VTI1A_MOUSE Vesicle transport through interaction with t-SNAREs homolog 1A (Vesicle transport v-SNARE protein Vti1-like 2) (Vti1-rp2) gb|AAC32049.1| 29-kDa Golgi SNARE [Mus musculus] gb|AAC23482.1| putative v-SNARE Vti1a [Mus musculus] 5.0E-36
Protein Domains
Database ID Description E-Value
Pfam IPR007705 EMBL-EBI Vesicle transport v-SNARE 5.2E-56
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502781.1 1 203-221
Y57G11C.4 1 203-221
SNAP00000003466 1 203-221
GENEFINDER00000003609 1 203-221
Sequence
Target Sequence 
>C. ELEGANS:185520_S_AT
gcttcaaactgcggaaatcacctcgaaaatcggccgcgtgcacactctgccatcgtccga
tcgagccggagcagttcaggaaattcgaaaaagtttggaagaagtgaatgatttgctgga
tcagatggagctggttgttagggagttggagtcgaatacaactgaacgcacaaaatacga
acttcgtgttcgaagctatcaaagtgacaagaaacaattggacacagagctggaaaaagc
tataaaaagagtcagagaagaagctgatcgggatgaattattggcatttgatgatcaatt
agatgagcataggcaggaggatcaactgatagcaaatactcagagattggagaggtctac
gcggaaagttcaagatgcacatcggattgctgttgagacggagcagatcggcgccgaaat
gctctccaaccttgcgagtcaacgtgaaacaatcggtcgttcccgtgatcgcctgcgcca
atcaaacgccgacttgggaagagccaacaagacgttaagctcgatgattcgtcgagcaat
tcagaatagattactccttttaattgtcacttttctactttcct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTTCAAACTGCGGAAATCACCTCG 516 305 771 Antisense
AAATCACCTCGAAAATCGGCCGCGT 178 117 785 Antisense
ATCGTCCGATCGAGCCGGAGCAGTT 477 35 822 Antisense
GGAGAGGTCTACGCGGAAAGTTCAA 605 493 1119 Antisense
GATGCACATCGGATTGCTGTTGAGA 431 413 1144 Antisense
TGTTGAGACGGAGCAGATCGGCGCC 440 563 1161 Antisense
AGCAGATCGGCGCCGAAATGCTCTC 33 79 1172 Antisense
CTCTCCAACCTTGCGAGTCAACGTG 458 231 1192 Antisense
GAAACAATCGGTCGTTCCCGTGATC 595 355 1216 Antisense
GCGCCAATCAAACGCCGACTTGGGA 44 287 1245 Antisense
TTAATTGTCACTTTTCTACTTTCCT 316 685 1330 Antisense
Sequence Source Affymetrix Proprietary Database