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[185517_at]

Description M01A10.5 /REP_DB=WormBase Gene ID /WP=CE12236 /TR=P91394 /GB=AAB42277.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 26      6grp_high1_10_10 > 51      4grp_high_8_8 > 58      6grp_highest_nonorm > 53      6grp_total > 61      4grp_total > 61      6grp_highest_sub > 03      6grp_cgc > 83      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 754
1 2 3 4 range
A 705
(3)
P 		558.5
(1.7)
P 		595.6
(2)
P 		23.3
(-3)
A 		682
B 618.6
(3)
P 		543.3
(2.2)
P 		619.6
(3)
P 		46.4
(-3)
P 		573
C 777.1
(3)
P 		534.8
(0.9)
P 		703.7
(2.3)
P 		100.9
(-3)
A 		676
avr 700.2
(3) 		545.5
(1.6) 		639.6
(2.4) 		56.9
(-3) 		643

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 865
1 2 3 4 5 6 range
A 472.4
(-2.7)
P 		805.9
(0.1)
P 		1150.5
(3)
P 		1051.2
(2.2)
P 		630.4
(-1.4)
P 		441.6
(-3)
P 		709
B 612.8
(-1.1)
P 		686.4
(-0.5)
P 		1086.1
(3)
P 		856.2
(1)
P 		633.1
(-0.9)
P 		396.6
(-3)
P 		690
C 600.8
(-2.1)
P 		617.3
(-2)
P 		1261.7
(3)
P 		958.5
(0.6)
P 		694.6
(-1.4)
P 		487.7
(-3)
P 		774
avr 562
(-2) 		703.2
(-0.8) 		1166.1
(3) 		955.3
(1.3) 		652.7
(-1.3) 		442
(-3) 		724
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 254
1 2 3 4 range
A 256.7
(3)
P 		121.2
(-0.2)
P 		155.7
(0.6)
P 		3.4
(-3)
A 		253
B 197.3
(3)
P 		134.2
(1)
P 		143.6
(1.3)
P 		9.9
(-3)
P 		187
C 257.3
(3)
P 		153.8
(0.4)
P 		245.3
(2.7)
P 		17
(-3)
A 		240
avr 237.1
(3) 		136.4
(0.3) 		181.5
(1.5) 		10.1
(-3) 		227

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 234
1 2 3 4 5 6 range
A 87.1
(-3)
P 		286.6
(3)
P 		250.5
(1.9)
P 		266.6
(2.4)
P 		190.2
(0.1)
P 		107.5
(-2.4)
P 		200
B 213.2
(0.4)
P 		228.5
(1.2)
P 		263.7
(3)
P 		226.8
(1.1)
P 		257.2
(2.7)
P 		147.9
(-3)
P 		116
C 222.7
(-0.7)
P 		188.3
(-2)
P 		321.1
(3)
P 		192.8
(-1.9)
P 		224.8
(-0.7)
P 		163.3
(-3)
P 		158
avr 174.3
(-1.5) 		234.5
(1.1) 		278.4
(3) 		228.7
(0.9) 		224.1
(0.7) 		139.6
(-3) 		139
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185517_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1061
Sequence Type Exemplar sequence
Representative Public ID M01A10.5 NCBI
Target Description M01A10.5 /REP_DB=WormBase Gene ID /WP=CE12236 /TR=P91394 /GB=AAB42277.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026404(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026404 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-52) (pqn-52) mRNA, complete cds. 11/11 None
M01E11.4c ENSEMBL cdna:known chromosome:CEL140:I:5566357:5570080:-1 gene:M01E11.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
172210 3 1 NM_001026404 185517_at (11)
NM_059229 173516_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5566494-5568151(-) 100.0 100.0
Public Domain and Genome References
Ensembl M01E11.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001021575 Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-52) [Caenorhabditis elegans] 0.0
blast CAE68912 Hypothetical protein CBG14891 [Caenorhabditis briggsae] 1.0E-125
blast T25833 hypothetical protein M01A10.5 - Caenorhabditis elegans 1.0E-118
Sequence
Target Sequence 
>C. ELEGANS:185517_AT
gaatcagcaggcatccaatagcaatcaagacaaccaggaacgtaacgaagtgccagcata
tgtattgcaaactagaaacaatttgaacaccaatagtgaagacggaaattccgagaatga
tagcgttttttatgagaaacaagatagacaagaaccaaaagatctatctgaaagcgaaaa
ttcaagaaattctgaaaatggagaaacatattattcagtgaatcctggagcgcctgttaa
tgaggaaatcaaacaaatcaaaattccaggaggagatgattctgaaaccgtcgaagtcag
tggacagtcccaagaaaaaccacacgttcgattcatcaaataccatccaccaactgtaat
cagggataagaaaggaaattcatacgaacgtattgttacagatggaattgctcattattt
tgatgcaagtggaaatgaagttaaaatagatgattcttcgatcgacagaaaaattgagca
aatccttgaaaaccgtcgtcgccaagaagaaaaactaagaagcgcattggaagattctga
cgcctcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCAGCAGGCATCCAATAGCAAT 590 327 270 Antisense
GGAACGTAACGAAGTGCCAGCATAT 232 529 306 Antisense
GAATCCTGGAGCGCCTGTTAATGAG 409 329 489 Antisense
GGAGATGATTCTGAAACCGTCGAAG 686 517 541 Antisense
ACCGTCGAAGTCAGTGGACAGTCCC 137 1 556 Antisense
GGACAGTCCCAAGAAAAACCACACG 446 525 571 Antisense
AAAACCACACGTTCGATTCATCAAA 333 131 585 Antisense
GATTCATCAAATACCATCCACCAAC 386 431 599 Antisense
TACCATCCACCAACTGTAATCAGGG 122 651 610 Antisense
GCAAATCCTTGAAAACCGTCGTCGC 105 317 747 Antisense
GCATTGGAAGATTCTGACGCCTCAC 617 307 793 Antisense
Sequence Source Affymetrix Proprietary Database