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[185516_s_at]

Description F19B10.1 /REP_DB=WormBase Gene ID /WP=CE09468 /TR=O02076 /GB=AAB52931.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 61      6grp_high1_10_10 > 17      4grp_highest_8_8 > 58      4grp_high_8_8 > 33      6grp_highest_nonorm > 50      6grp_total > 17      4grp_total > 46      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 358
1 2 3 4 range
A 656.4
(3)
P 		516.8
(0.3)
P 		347.6
(-3)
P 		388
(-2.2)
P 		309
B 695.6
(3)
P 		420.7
(-1.8)
P 		404.8
(-2.1)
P 		354.4
(-3)
P 		341
C 705.8
(3)
P 		391.7
(-2.5)
P 		363
(-3)
P 		415.4
(-2.1)
P 		343
avr 685.9
(3) 		443.1
(-1.6) 		371.8
(-3) 		385.9
(-2.7) 		314

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 691
1 2 3 4 5 6 range
A 930.3
(3)
P 		458.6
(-1.3)
P 		335.2
(-2.4)
P 		271.9
(-3)
P 		287.9
(-2.9)
P 		354.8
(-2.2)
P 		658
B 722.6
(3)
P 		488.6
(0.1)
P 		360.8
(-1.5)
P 		291.9
(-2.3)
P 		239.1
(-3)
P 		328.3
(-1.9)
P 		484
C 664.3
(3)
P 		482.8
(0.4)
P 		334.5
(-1.8)
P 		250.1
(-3)
P 		286.5
(-2.5)
P 		260.6
(-2.8)
P 		414
avr 772.4
(3) 		476.7
(-0.5) 		343.5
(-2.1) 		271.3
(-3) 		271.2
(-3) 		314.6
(-2.5) 		501
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 182
1 2 3 4 range
A 239
(3)
P 		112.2
(-1.2)
P 		90.9
(-1.9)
P 		56.8
(-3)
P 		182
B 221.8
(3)
P 		103.9
(-1.8)
P 		93.8
(-2.2)
P 		75.5
(-3)
P 		146
C 233.6
(3)
P 		112.6
(-1.4)
P 		126.5
(-0.9)
P 		70
(-3)
P 		164
avr 231.5
(3) 		109.6
(-1.5) 		103.7
(-1.7) 		67.4
(-3) 		164

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 201
1 2 3 4 5 6 range
A 171.5
(3)
P 		163.1
(2.5)
P 		73
(-2.8)
P 		69
(-3)
P 		86.9
(-2)
P 		86.4
(-2)
P 		103
B 251.4
(3)
P 		162.6
(-0.1)
P 		87.6
(-2.6)
P 		77.3
(-3)
P 		97.1
(-2.3)
P 		122.4
(-1.4)
P 		174
C 246.2
(3)
P 		147.3
(-0)
P 		85.1
(-1.9)
P 		50.3
(-3)
P 		92.7
(-1.7)
P 		87.2
(-1.9)
P 		196
avr 223
(3) 		157.7
(0.5) 		81.9
(-2.4) 		65.5
(-3) 		92.2
(-2) 		98.7
(-1.7) 		158
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185516_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5767
Sequence Type Exemplar sequence
Representative Public ID F19B10.1 NCBI
Target Description F19B10.1 /REP_DB=WormBase Gene ID /WP=CE09468 /TR=O02076 /GB=AAB52931.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062213(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062213 NCBI Caenorhabditis elegans F19B10.1 (F19B10.1) mRNA, complete cds. 11/11 A 
SNAP00000017125 ENSEMBL cdna:SNAP chromosome:CEL140:II:3683184:3684440:1 11/11 None
F19B10.1 ENSEMBL cdna:known chromosome:CEL140:II:3683171:3684990:1 gene:F19B10.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000017140 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3683182-3684439(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F19B10.1
Entrez Gene 173713 Entrez gene
SwissProt O02076 EMBL-EBI
WormBase CE09468 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52931 Hypothetical protein F19B10.1 [Caenorhabditis elegans] ref|NP_494614.1| F19B10.1 [Caenorhabditis elegans] 1.0E-110
blast CAE73851 Hypothetical protein CBG21426 [Caenorhabditis briggsae] 6.0E-10
Sequence
Target Sequence 
>C. ELEGANS:185516_S_AT
gatgatcaggacgtgactccgaagaagaatagaaagcctccagttgaagtggttactcca
tcgccagccaaaagattgagaggacttaacttgagatcggcccacagctcatcagactcg
gaaagcgacttccaagacacccagtgtgaagactctcaagactcggactacttcccggat
acccaggagcagcgagaccgccccgcggacttcaggattccaaaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGATCAGGACGTGACTCCGAAGA 146 411 556 Antisense
GAATAGAAAGCCTCCAGTTGAAGTG 479 325 582 Antisense
AGTTGAAGTGGTTACTCCATCGCCA 282 63 597 Antisense
CTCCATCGCCAGCCAAAAGATTGAG 230 235 611 Antisense
AGGACTTAACTTGAGATCGGCCCAC 308 1 636 Antisense
CCACAGCTCATCAGACTCGGAAAGC 291 275 657 Antisense
GGAAAGCGACTTCCAAGACACCCAG 488 527 675 Antisense
GACACCCAGTGTGAAGACTCTCAAG 106 365 691 Antisense
TCAAGACTCGGACTACTTCCCGGAT 96 631 711 Antisense
CGGATACCCAGGAGCAGCGAGACCG 633 243 731 Antisense
CCCGCGGACTTCAGGATTCCAAAGA 227 253 757 Antisense
Sequence Source Affymetrix Proprietary Database