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[185515_at]

Description F19B10.1 /REP_DB=WormBase Gene ID /WP=CE09468 /TR=O02076 /GB=AAB52931.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 07      4grp_total > 47      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 207
1 2 3 4 range
A 358.1
(3)
P 		245.1
(-2.4)
A 		271.8
(-1.1)
A 		232.1
(-3)
A 		126
B 408.2
(3)
P 		213.2
(-2.7)
A 		201.5
(-3)
A 		225.9
(-2.3)
A 		207
C 394.9
(3)
P 		259.2
(-1.5)
A 		214.7
(-3)
A 		237.4
(-2.2)
A 		180
avr 387.1
(3) 		239.2
(-2.6) 		229.3
(-3) 		231.8
(-2.9) 		158

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 278
1 2 3 4 5 6 range
A 399.5
(3)
P 		270.5
(-0.2)
A 		201.8
(-1.9)
A 		157.1
(-3)
A 		159.9
(-2.9)
A 		204.4
(-1.8)
A 		242
B 380.3
(3)
P 		210.4
(-0.9)
A 		193
(-1.3)
A 		121.4
(-3)
A 		181.4
(-1.6)
A 		183.5
(-1.6)
A 		259
C 354.5
(3)
M 		272
(0.6)
A 		257.8
(0.1)
A 		192.2
(-1.8)
A 		153.8
(-2.9)
A 		152.1
(-3)
A 		202
avr 378.1
(3) 		251
(-0.4) 		217.5
(-1.4) 		156.9
(-3) 		165
(-2.8) 		180
(-2.4) 		221
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 130.4
(3)
P 		53.2
(-1.8)
A 		71
(-0.7)
A 		34
(-3)
A 		96
B 130.2
(3)
P 		52.6
(-2.6)
A 		46.7
(-3)
A 		48.1
(-2.9)
A 		84
C 130.7
(3)
P 		74.5
(-0.7)
A 		74.8
(-0.7)
A 		40
(-3)
A 		91
avr 130.4
(3) 		60.1
(-1.7) 		64.2
(-1.4) 		40.7
(-3) 		90

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 100
1 2 3 4 5 6 range
A 73.6
(0.6)
P 		96.2
(3)
A 		44
(-2.6)
A 		39.9
(-3)
A 		48.3
(-2.1)
A 		49.8
(-1.9)
A 		56
B 132.3
(3)
P 		70
(-0.7)
A 		46.9
(-2.1)
A 		32.2
(-3)
A 		73.7
(-0.5)
A 		68.4
(-0.8)
A 		100
C 131.4
(3)
M 		83
(-0.1)
A 		65.6
(-1.3)
A 		38.6
(-3)
A 		49.8
(-2.3)
A 		50.9
(-2.2)
A 		93
avr 112.4
(3) 		83.1
(0.7) 		52.2
(-1.8) 		36.9
(-3) 		57.3
(-1.4) 		56.4
(-1.5) 		76
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185515_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5767
Sequence Type Exemplar sequence
Representative Public ID F19B10.1 NCBI
Target Description F19B10.1 /REP_DB=WormBase Gene ID /WP=CE09468 /TR=O02076 /GB=AAB52931.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062213(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062213 NCBI Caenorhabditis elegans F19B10.1 (F19B10.1) mRNA, complete cds. 11/11 A 
SNAP00000017125 ENSEMBL cdna:SNAP chromosome:CEL140:II:3683184:3684440:1 11/11 None
GENEFINDER00000017140 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:3683184:3685013:1 11/11 None
F19B10.1 ENSEMBL cdna:known chromosome:CEL140:II:3683171:3684990:1 gene:F19B10.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:3683182-3684439(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F19B10.1
Entrez Gene 173713 Entrez gene
SwissProt O02076 EMBL-EBI
WormBase CE09468 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52931 Hypothetical protein F19B10.1 [Caenorhabditis elegans] ref|NP_494614.1| F19B10.1 [Caenorhabditis elegans] 1.0E-110
blast AAB52931 Hypothetical protein F19B10.1 [Caenorhabditis elegans] ref|NP_494614.1| F19B10.1 [Caenorhabditis elegans] 2.0E-81
blast CAE73851 Hypothetical protein CBG21426 [Caenorhabditis briggsae] 6.0E-10
Sequence
Target Sequence 
>C. ELEGANS:185515_AT
cagtccagaagcctgctgttgagccaagcccatcatgctccccagaaactgttgccgttc
agaaatttgtaacagaattcatgcaggctgctggaggatcgagggagctgagaatcataa
aagattcccaggagacaaagattgtctggaaaacttctcctgcaaagcctaaggctcccc
cggttgaggatgatccgactgacccgactgacagccaggtatcaactgtttcgagcatca
tcccagtctcctcgccacgcggaaaacggagaattgtggtctcctcggataagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAGTCCAGAAGCCTGCTGTTGAGCC 376 207 218 Antisense
CTGTTGAGCCAAGCCCATCATGCTC 582 239 233 Antisense
TCCCCAGAAACTGTTGCCGTTCAGA 257 595 256 Antisense
TGCAGGCTGCTGGAGGATCGAGGGA 360 577 299 Antisense
GATTGTCTGGAAAACTTCTCCTGCA 420 435 357 Antisense
ACTTCTCCTGCAAAGCCTAAGGCTC 438 103 370 Antisense
TTGAGGATGATCCGACTGACCCGAC 404 703 401 Antisense
TGACCCGACTGACAGCCAGGTATCA 693 567 417 Antisense
GTATCAACTGTTTCGAGCATCATCC 83 455 436 Antisense
TCTCCTCGCCACGCGGAAAACGGAG 11 609 464 Antisense
AGAATTGTGGTCTCCTCGGATAAGG 22 75 487 Antisense
Sequence Source Affymetrix Proprietary Database