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[185513_at]

Description Y47D3B.11 /REP_DB=WormBase Gene ID /WP=CE24342 /TR=Q9U2B7 /GB=CAB54384.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 24      4grp_high_8_8 > 26      6grp_total > 01      4grp_total > 37      6grp_high1_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 124
1 2 3 4 range
A 273.6
(3)
P 		196.7
(-0.7)
P 		149.5
(-3)
P 		173.9
(-1.8)
P 		124
B 204.8
(1.4)
P 		218.1
(3)
P 		168
(-3)
M 		204.3
(1.3)
P 		50
C 233.2
(3)
P 		219.9
(1.7)
P 		173.1
(-3)
P 		197.7
(-0.5)
P 		60
avr 237.2
(3) 		211.6
(0.9) 		163.5
(-3) 		192
(-0.7) 		74

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 132
1 2 3 4 5 6 range
A 93.9
(-3)
A 		217.9
(3)
P 		133.1
(-1.1)
P 		158.4
(0.1)
P 		122.7
(-1.6)
P 		158.7
(0.1)
P 		124
B 131
(-1.4)
P 		216.8
(3)
P 		123.9
(-1.8)
P 		130.8
(-1.4)
P 		99.8
(-3)
A 		120.6
(-1.9)
P 		117
C 225.5
(3)
P 		179.4
(0)
P 		175.5
(-0.2)
P 		156.6
(-1.4)
P 		144.4
(-2.2)
P 		131.9
(-3)
P 		94
avr 150.1
(-1) 		204.7
(3) 		144.2
(-1.4) 		148.6
(-1.1) 		122.3
(-3) 		137.1
(-1.9) 		82
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 99.6
(3)
P 		42.7
(-1.6)
P 		39.1
(-1.9)
P 		25.5
(-3)
P 		74
B 65.3
(3)
P 		53.9
(0.4)
P 		38.9
(-3)
M 		43.5
(-2)
P 		26
C 77.2
(3)
P 		63.2
(1.1)
P 		60.3
(0.7)
P 		33.3
(-3)
P 		44
avr 80.7
(3) 		53.3
(-0.5) 		46.1
(-1.5) 		34.1
(-3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 17.3
(-3)
A 		77.5
(3)
P 		29
(-1.8)
P 		40.2
(-0.7)
P 		37
(-1)
P 		38.6
(-0.9)
P 		60
B 45.6
(-0.8)
P 		72.2
(3)
P 		30.1
(-3)
P 		34.6
(-2.4)
P 		40.6
(-1.5)
A 		45
(-0.9)
P 		42
C 83.6
(3)
P 		54.7
(-0.3)
P 		44.7
(-1.5)
P 		31.5
(-3)
P 		46.7
(-1.2)
P 		44.2
(-1.5)
P 		52
avr 48.8
(-0.5) 		68.1
(3) 		34.6
(-3) 		35.4
(-2.9) 		41.4
(-1.8) 		42.6
(-1.6) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185513_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7918
Sequence Type Exemplar sequence
Representative Public ID Y47D3B.11 NCBI
Target Description Y47D3B.11 /REP_DB=WormBase Gene ID /WP=CE24342 /TR=Q9U2B7 /GB=CAB54384.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067072(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067072 NCBI Caenorhabditis elegans Y47D3B.11 (Y47D3B.11) mRNA, complete cds. 11/11 None
GENEFINDER00000004527 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:11456803:11462397:1 11/11 None
SNAP00000004519 ENSEMBL cdna:SNAP chromosome:CEL140:III:11459819:11462397:1 11/11 None
Y47D3B.11 ENSEMBL cdna:known chromosome:CEL140:III:11456753:11462758:1 gene:Y47D3B.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:11456798-11461340(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y47D3B.11
Entrez Gene 176575 Entrez gene
SwissProt Q9U2B7 EMBL-EBI
WormBase CE33946 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB54384 Hypothetical protein Y47D3B.11 [Caenorhabditis elegans] ref|NP_499473.2| Y47D3B.11 [Caenorhabditis elegans] 0.0
blast CAB54384 Hypothetical protein Y47D3B.11 [Caenorhabditis elegans] ref|NP_499473.2| Y47D3B.11 [Caenorhabditis elegans] 1.0E-153
blast CAE67709 Hypothetical protein CBG13282 [Caenorhabditis briggsae] 1.0E-148
blast CAE67709 Hypothetical protein CBG13282 [Caenorhabditis briggsae] 2.0E-87
blast AAH75707 4732452J19Rik protein [Mus musculus] 4.0E-13
blast AAH75707 4732452J19Rik protein [Mus musculus] 6.0E-13
Protein Domains
Database ID Description E-Value
Pfam IPR001841 EMBL-EBI Zn-finger, RING 6.2E-14
Pfam IPR001841 EMBL-EBI Zn-finger, RING 6.2E-14
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499473.2 1 209-231
Y47D3B.11 1 209-231
GENEFINDER00000004527 1 209-231
SNAP00000004519 1 76-98
Sequence
Target Sequence 
>C. ELEGANS:185513_AT
gagatccgcatcagaacgcggcgctgtcaccaagctccgaatctcgtttatcgacgagaa
gcccaccaaagtcttgaagcttcaagttttccgaccaactgttcttaacatcacactcct
tggattactcatcattttgatcgtttttgtatcgcttctagtcgttgttaaaatcagatg
ccagcctaccatgcatcgagagctctggctacgggctctcgcgagaactgctttgacgaa
gatggagattcgaagcttccaaaaggaaaagaacgttgaagccggccagaaaaagaagac
aagctccacatttgcccgattaaaacaacacagatcctcctcatctcggcactcgtcata
tcttgccgtattcggctctctcacctcggtggctcaatcatcgtcacattcggcacaaga
gagatgtgtgatatgcttggaagagtacgaagagggtactgagcttcgtgtcctgttctg
cggtcacgagttccatccgaaatgtgtcgatccgtggttgctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGATCCGCATCAGAACGCGGCGCT 271 397 537 Antisense
CACCAAGCTCCGAATCTCGTTTATC 116 203 564 Antisense
GAAGCTTCAAGTTTTCCGACCAACT 673 327 612 Antisense
ACATCACACTCCTTGGATTACTCAT 30 107 644 Antisense
GTATCGCTTCTAGTCGTTGTTAAAA 679 453 685 Antisense
CAGCCTACCATGCATCGAGAGCTCT 273 203 718 Antisense
GCTCTCGCGAGAACTGCTTTGACGA 118 301 751 Antisense
GCACTCGTCATATCTTGCCGTATTC 468 315 885 Antisense
ATCATCGTCACATTCGGCACAAGAG 489 29 933 Antisense
TGCGGTCACGAGTTCCATCCGAAAT 407 579 1015 Antisense
GAAATGTGTCGATCCGTGGTTGCTG 310 361 1035 Antisense
Sequence Source Affymetrix Proprietary Database