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[185511_at]

Description Y53F4B.13 /REP_DB=WormBase Gene ID /WP=CE25394 /TR=Q9NAA5 /GB=CAB70104.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 25      4grp_total > 21      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 111
1 2 3 4 range
A 81
(3)
A 		61.3
(0.9)
A 		23.8
(-3)
A 		43.6
(-0.9)
A 		57
B 43.7
(-0.8)
A 		25
(-3)
A 		30.6
(-2.3)
A 		76.6
(3)
A 		52
C 75.1
(-0.3)
A 		39.2
(-2.3)
A 		26.9
(-3)
A 		134.6
(3)
A 		108
avr 66.6
(1.1) 		41.8
(-1.5) 		27.1
(-3) 		84.9
(3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 57.9
(3)
A 		54.3
(2.6)
A 		34
(0.1)
A 		8.4
(-3)
A 		25.8
(-0.9)
A 		45.9
(1.5)
A 		50
B 60.5
(3)
A 		46.1
(1.5)
A 		51.9
(2.1)
A 		37.9
(0.7)
A 		7.9
(-2.4)
A 		2.1
(-3)
A 		58
C 54.2
(2.5)
A 		58.5
(3)
A 		9.6
(-2.3)
A 		3.5
(-3)
A 		3.7
(-3)
A 		31.5
(0.1)
A 		55
avr 57.5
(3) 		53
(2.4) 		31.8
(-0.4) 		16.6
(-2.5) 		12.5
(-3) 		26.5
(-1.1) 		45
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 29.5
(3)
A 		13.3
(-1.2)
A 		6.2
(-3)
A 		6.4
(-2.9)
A 		23
B 13.9
(1.6)
A 		6.2
(-3)
A 		7.1
(-2.5)
A 		16.3
(3)
A 		10
C 24.9
(3)
A 		11.3
(-2.3)
A 		9.4
(-3)
A 		22.7
(2.1)
A 		16
avr 22.8
(3) 		10.3
(-1.9) 		7.6
(-3) 		15.1
(-0) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 10.7
(0)
A 		19.3
(3)
A 		7.4
(-1.2)
A 		2.1
(-3)
A 		7.8
(-1)
A 		11.2
(0.2)
A 		17
B 21
(3)
A 		15.3
(1.3)
A 		12.6
(0.5)
A 		10
(-0.3)
A 		3.2
(-2.3)
A 		0.8
(-3)
A 		20
C 20.1
(3)
A 		17.8
(2.3)
A 		2.4
(-2.5)
A 		0.7
(-3)
A 		1.2
(-2.8)
A 		10.5
(0)
A 		19
avr 17.3
(2.9) 		17.5
(3) 		7.5
(-1.5) 		4.3
(-2.9) 		4.1
(-3) 		7.5
(-1.5) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185511_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3155
Sequence Type Exemplar sequence
Representative Public ID Y53F4B.13 NCBI
Target Description Y53F4B.13 /REP_DB=WormBase Gene ID /WP=CE25394 /TR=Q9NAA5 /GB=CAB70104.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064697(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064697 NCBI Caenorhabditis elegans Y53F4B.13 (Y53F4B.13) mRNA, complete cds. 11/11 None
SNAP00000043048 ENSEMBL cdna:SNAP chromosome:CEL140:II:15026086:15039096:1 11/11 None
Y53F4B.13 ENSEMBL cdna:known chromosome:CEL140:II:15026070:15037697:1 gene:Y53F4B.13 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000043135 5/11 Cross Hyb Matching Probes None
GENEFINDER00000043151 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:15026082-15036919(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y53F4B.13
Entrez Gene 175156 Entrez gene
SwissProt Q9NAA5 EMBL-EBI
WormBase CE35673 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.18371.1.S1_S_AT similar to CG6379-PA cfa
CANINE_2:CFA.21585.1.S1_S_AT similar to CG6379-PA cfa
CANINE_2:CFAAFFX.3098.1.S1_AT similar to CG6379-PA cfa
CANINE_2:CFAAFFX.3103.1.S1_AT similar to CG6379-PA cfa
DROSOPHILA_2:1639536_AT dm
DROSGENOME1:144464_AT dm
CHICKEN:GGAAFFX.23140.1.S1_AT similar to KIAA0082 gga
HU35KSUBC:RC_C14086_S_AT KIAA0082 hs
HUGENEFL:D43949_AT KIAA0082 hs
U133_X3P:HS.154045.0.S1_3P_AT KIAA0082 hs
HG-U133A_2:212380_AT KIAA0082 hs
HG-U133_PLUS_2:212380_AT KIAA0082 hs
HG-U133A:212380_AT KIAA0082 hs
HG-U95AV2:40054_AT KIAA0082 hs
HU35KSUBB:RC_AA156235_AT KIAA0082 hs
MOUSE430A_2:1451082_AT RIKEN cDNA 1300018I05 gene mm
MOUSE430_2:1451082_AT RIKEN cDNA 1300018I05 gene mm
MOE430A:1451082_AT RIKEN cDNA 1300018I05 gene mm
MOUSE430A_2:1423681_AT RIKEN cDNA 1300018I05 gene mm
MOUSE430_2:1423681_AT RIKEN cDNA 1300018I05 gene mm
MOE430A:1423681_AT RIKEN cDNA 1300018I05 gene mm
MG-U74AV2:98049_AT RIKEN cDNA 1300018I05 gene mm
MOE430B:1439522_AT RIKEN cDNA 1300018I05 gene (1300018I05Rik), mRNA mm
MOUSE430_2:1439522_AT RIKEN cDNA 1300018I05 gene (1300018I05Rik), mRNA mm
MOE430B:1443388_AT RIKEN cDNA 1300018I05 gene (1300018I05Rik), mRNA mm
MOUSE430_2:1443388_AT RIKEN cDNA 1300018I05 gene (1300018I05Rik), mRNA mm
MOE430B:1444550_AT RIKEN cDNA 1300018I05 gene (1300018I05Rik), mRNA mm
MOUSE430_2:1444550_AT RIKEN cDNA 1300018I05 gene (1300018I05Rik), mRNA mm
MU19KSUBA:TC20725_AT RIKEN cDNA 1300018I05 gene (1300018I05Rik), mRNA mm
MU19KSUBA:TC20725_G_AT RIKEN cDNA 1300018I05 gene (1300018I05Rik), mRNA mm
MU19KSUBB:TC34324_AT RIKEN cDNA 1300018I05 gene (1300018I05Rik), mRNA mm
RG-U34C:RC_AI113020_AT similar to RIKEN cDNA 1300018I05 (predicted) rn
RAE230A:1398925_AT similar to RIKEN cDNA 1300018I05 (predicted) rn
RAT230_2:1398925_AT similar to RIKEN cDNA 1300018I05 (predicted) rn
RAT230_2:1392390_AT Similar to RIKEN cDNA 1300018I05 (predicted) rn
RAE230B:1392390_AT Similar to RIKEN cDNA 1300018I05 (predicted) rn
RAE230B:1397095_AT Similar to RIKEN cDNA 1300018I05 (predicted) rn
RAT230_2:1397095_AT Similar to RIKEN cDNA 1300018I05 (predicted) rn
RAE230B:1397862_AT Similar to RIKEN cDNA 1300018I05 (predicted) rn
RAT230_2:1397862_AT Similar to RIKEN cDNA 1300018I05 (predicted) rn
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB70104 Hypothetical protein Y53F4B.13 [Caenorhabditis elegans] ref|NP_497098.2| Y53F4B.13 [Caenorhabditis elegans] 0.0
blast CAE73457 Hypothetical protein CBG20907 [Caenorhabditis briggsae] 0.0
blast CAE73456 Hypothetical protein CBG20906 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000467 EMBL-EBI D111/G-patch domain 8.9E-15
Pfam IPR002877 EMBL-EBI Ribosomal RNA methyltransferase RrmJ/FtsJ 1.0E-40
Sequence
Target Sequence 
>C. ELEGANS:185511_AT
gagaagtttgtggccgctttgaagcagacaaatcgtaaagtgaagaaaggatggggacac
cgagcagaaatgatcaagccacatttgaaaatatgtgccaaaacgtattcacttgccgag
ctcgacgaattccgttcgaatttggagaagttggagcacaatcgggagctcgccgtgctc
ttcacagaaggagaattcacgttccggtgccaggcactacggtttacgagaattatcaaa
caagaatggcgtatgggatggtcgaaaagtcaacaaaagccatatgctcactcacaggaa
caccagaacgctggatcgattccagtggagctttgggcggaaaaatcgatatattcgtcg
ttttgggacagtgtcatctgtctgaataaggataaaaaaaagcttatggaagcaatggag
catactaagggaaaatgtccgattccatcaagtatttggagctggaaagcgtgcatttta
aaccttttcccttttttttcagttcgcaccccatatggacctgagaaaatcctcaactac
cctgagccatttgaaggaaaaccgacgattgcagcattgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGAAGTTTGTGGCCGCTTTGAAGC 384 391 2251 Antisense
GCCAAAACGTATTCACTTGCCGAGC 692 275 2347 Antisense
CGAGCTCGACGAATTCCGTTCGAAT 427 249 2367 Antisense
GTTGGAGCACAATCGGGAGCTCGCC 146 437 2400 Antisense
GAAGGAGAATTCACGTTCCGGTGCC 204 333 2437 Antisense
GTGCCAGGCACTACGGTTTACGAGA 293 477 2457 Antisense
TATGCTCACTCACAGGAACACCAGA 611 657 2533 Antisense
GATTCCAGTGGAGCTTTGGGCGGAA 186 431 2568 Antisense
GAAAATGTCCGATTCCATCAAGTAT 65 355 2681 Antisense
CTCAACTACCCTGAGCCATTTGAAG 327 227 2782 Antisense
GAAAACCGACGATTGCAGCATTGAA 181 355 2807 Antisense
Sequence Source Affymetrix Proprietary Database