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[185510_at]

Description Y95B8A.8 /REP_DB=WormBase Gene ID /WP=CE24694 /TR=Q9N2W1 /GB=AAF60906.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 94      4grp_total > 32      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 2.1
(-3)
A 		6.8
(-2.1)
A 		4.9
(-2.5)
A 		33
(3)
A 		31
B 2.4
(-3)
A 		2.7
(-2.9)
A 		16.6
(3)
A 		3
(-2.7)
A 		14
C 4.4
(-2.6)
A 		2.6
(-3)
A 		32.2
(3)
A 		9.2
(-1.7)
A 		30
avr 3
(-3) 		4
(-2.6) 		17.9
(3) 		15.1
(1.9) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 5.1
(-2.3)
A 		5.1
(-2.3)
A 		2.3
(-2.9)
A 		1.8
(-3)
A 		25.5
(1.7)
A 		32.2
(3)
A 		30
B 3.4
(-2.5)
A 		3.3
(-2.5)
A 		2.5
(-2.8)
A 		22.6
(3)
A 		13.9
(0.5)
A 		1.7
(-3)
A 		21
C 5.2
(-2.2)
A 		8.8
(-1.3)
A 		2.1
(-2.9)
A 		27
(3)
A 		2.6
(-2.8)
A 		1.7
(-3)
A 		25
avr 4.6
(-2.1) 		5.7
(-1.6) 		2.3
(-3) 		17.1
(3) 		14
(1.7) 		11.9
(0.9) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 0.8
(-3)
A 		1.5
(-2)
A 		1.3
(-2.3)
A 		4.8
(3)
A 		4
B 0.8
(-2.6)
A 		0.7
(-2.8)
A 		3.8
(3)
A 		0.6
(-3)
A 		3
C 1.5
(-2.5)
A 		0.7
(-3)
A 		11.2
(3)
A 		1.6
(-2.5)
A 		11
avr 1
(-3) 		1
(-3) 		5.4
(3) 		2.3
(-1.2) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 0.9
(-2.6)
A 		1.8
(-1.9)
A 		0.5
(-2.9)
A 		0.4
(-3)
A 		7.7
(2.9)
A 		7.8
(3)
A 		7
B 1.2
(-2.3)
A 		1.1
(-2.4)
A 		0.6
(-3)
A 		6
(3)
A 		5.6
(2.6)
A 		0.6
(-3)
A 		5
C 1.9
(-1.3)
A 		2.7
(-0.3)
A 		0.5
(-3)
A 		5.4
(3)
A 		0.8
(-2.6)
A 		0.6
(-2.9)
A 		5
avr 1.3
(-1.9) 		1.9
(-1) 		0.5
(-3) 		3.9
(1.9) 		4.7
(3) 		3
(0.6) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185510_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.25
Sequence Type Exemplar sequence
Representative Public ID Y95B8A.8 NCBI
Target Description Y95B8A.8 /REP_DB=WormBase Gene ID /WP=CE24694 /TR=Q9N2W1 /GB=AAF60906.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058384(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058384 NCBI Caenorhabditis elegans Y95B8A.8 (Y95B8A.8) mRNA, complete cds. 11/11 None
Y95B8A.8 ENSEMBL cdna:known chromosome:CEL140:I:850571:854133:1 gene:Y95B8A.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000034252 8/11 Cross Hyb Matching Probes None
GENEFINDER00000034281 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:850570-854133(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y95B8A.8
Entrez Gene 190806 Entrez gene
SwissProt Q9N2W1 EMBL-EBI
WormBase CE24694 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60906 Hypothetical protein Y95B8A.8 [Caenorhabditis elegans] ref|NP_490785.1| Y95B8A.8 [Caenorhabditis elegans] 5.0E-65
Sequence
Target Sequence 
>C. ELEGANS:185510_AT
taaaagcggagtttcgttgcgatgtaaaatttggagaaaaattgaaaactgaggaggaag
aaaaagttaaatgcctcttcgcaagaccgggattaaataagcctacgggaaccagcaggc
ggcttcacaaccatatcaacagcaaggacaacagaattattacccgtaactcgaaaaaaa
ttcaaaaaattcgaaaaaaatcaattaaaaagatcaaaattttcaattttttcagcggag
tgaacccgtacgcggcgaattatgggtacgcggcagcacagcttccaccaccacctccac
caccgccagtagccgatccatacgccggccaatttcagacatttccctctcaagccacca
aaatagcgccgaatccctactttaaaaagccacaaaatcagcagcaacagggctacgacg
cggcggtctacaattacgctcagcagaatactccgaaaaattggaaacacggcggcggcg
gccggcaggggagacagggatctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAAAAGCGGAGTTTCGTTGCGATGT 223 637 20 Antisense
AGTTAAATGCCTCTTCGCAAGACCG 587 1 84 Antisense
AGCCTACGGGAACCAGCAGGCGGCT 670 81 119 Antisense
TTTTCAGCGGAGTGAACCCGTACGC 55 671 248 Antisense
GAACCCGTACGCGGCGAATTATGGG 580 345 261 Antisense
AATTATGGGTACGCGGCAGCACAGC 280 175 277 Antisense
TCCCTCTCAAGCCACCAAAATAGCG 102 599 363 Antisense
CAAAATAGCGCCGAATCCCTACTTT 362 189 378 Antisense
TCAGCAGCAACAGGGCTACGACGCG 563 623 417 Antisense
GCGGCGGTCTACAATTACGCTCAGC 675 293 439 Antisense
GGCCGGCAGGGGAGACAGGGATCTG 136 541 499 Antisense
Sequence Source Affymetrix Proprietary Database