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[185509_at]

Description Y53F4B.16 /REP_DB=WormBase Gene ID /WP=CE24423 /TR=Q9NAB8 /GB=CAB61086.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 52      4grp_total > 34      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 3.8
(-3)
A 		5.6
(-1.8)
A 		5.4
(-1.9)
A 		12.8
(3)
A 		9
B 5.3
(-1.7)
A 		13.1
(3)
A 		3.5
(-2.8)
A 		3.1
(-3)
A 		10
C 3.3
(-3)
A 		4.6
(0.7)
A 		5.4
(3)
A 		4.7
(1)
A 		2
avr 4.1
(-3) 		7.8
(3) 		4.8
(-1.9) 		6.9
(1.5) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 39
1 2 3 4 5 6 range
A 6.7
(1.2)
A 		3.3
(-1.7)
A 		8.9
(3)
A 		7.8
(2.1)
A 		2.8
(-2.1)
A 		1.7
(-3)
A 		7
B 4.2
(-2.8)
A 		7.6
(-2.3)
A 		41.1
(3)
A 		10.5
(-1.8)
A 		9.3
(-2)
A 		3
(-3)
A 		38
C 8
(-0.2)
A 		3.9
(-2.8)
A 		13
(3)
A 		4.6
(-2.4)
A 		4.5
(-2.4)
A 		3.6
(-3)
A 		9
avr 6.3
(-1.8) 		4.9
(-2.3) 		21
(3) 		7.6
(-1.4) 		5.5
(-2.1) 		2.8
(-3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 1.4
(-1.3)
A 		1.2
(-3)
A 		1.4
(-1.3)
A 		1.9
(3)
A 		1
B 1.7
(-0.6)
A 		3.2
(3)
A 		0.8
(-2.8)
A 		0.7
(-3)
A 		3
C 1.1
(-1.4)
A 		1.3
(-0.3)
A 		1.9
(3)
A 		0.8
(-3)
A 		1
avr 1.4
(-0.8) 		1.9
(3) 		1.4
(-0.8) 		1.1
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 1.2
(-0)
A 		1.2
(-0)
A 		1.9
(2.6)
A 		2
(3)
A 		0.9
(-1.1)
A 		0.4
(-3)
A 		2
B 1.5
(-2.7)
A 		2.5
(-2.1)
A 		10
(3)
A 		2.8
(-1.9)
A 		3.8
(-1.2)
A 		1.1
(-3)
A 		9
C 3
(2.3)
A 		1.2
(-2.3)
A 		3.3
(3)
A 		0.9
(-3)
A 		1.5
(-1.5)
A 		1.2
(-2.3)
A 		2
avr 1.9
(-1.6) 		1.6
(-2) 		5.1
(3) 		1.9
(-1.6) 		2.1
(-1.3) 		0.9
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185509_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3562
Sequence Type Exemplar sequence
Representative Public ID Y53F4B.16 NCBI
Target Description Y53F4B.16 /REP_DB=WormBase Gene ID /WP=CE24423 /TR=Q9NAB8 /GB=CAB61086.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064700(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064700 NCBI Caenorhabditis elegans Y53F4B.16 (Y53F4B.16) mRNA, complete cds. 11/11 A 
SNAP00000043051 ENSEMBL cdna:SNAP chromosome:CEL140:II:15044783:15116261:-1 9/11 None
GENEFINDER00000043140 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:15051975:15058031:-1 11/11 None
Y53F4B.16 ENSEMBL cdna:known chromosome:CEL140:II:15051975:15055608:-1 gene:Y53F4B.16 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:15051971-15055605(-) 92.57 100.0
Public Domain and Genome References
Gene Title
Ensembl Y53F4B.16
Entrez Gene 190215 Entrez gene
SwissProt Q9NAB8 EMBL-EBI
WormBase CE24423 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB61089 Hypothetical protein Y53F4B.18 [Caenorhabditis elegans] ref|NP_497103.1| Y53F4B.18 [Caenorhabditis elegans] 1.0E-177
blast CAE73454 Hypothetical protein CBG20903 [Caenorhabditis briggsae] 1.0E-167
blast CAB61086 Hypothetical protein Y53F4B.16 [Caenorhabditis elegans] ref|NP_497101.1| Y53F4B.16 [Caenorhabditis elegans] 1.0E-146
blast CAB61086 Hypothetical protein Y53F4B.16 [Caenorhabditis elegans] ref|NP_497101.1| Y53F4B.16 [Caenorhabditis elegans] 1.0E-135
blast CAB61086 Hypothetical protein Y53F4B.16 [Caenorhabditis elegans] ref|NP_497101.1| Y53F4B.16 [Caenorhabditis elegans] 3.0E-76
blast CAB70107 Hypothetical protein Y53F4B.17 [Caenorhabditis elegans] ref|NP_497102.1| Y53F4B.17 [Caenorhabditis elegans] 3.0E-57
blast CAB70107 Hypothetical protein Y53F4B.17 [Caenorhabditis elegans] ref|NP_497102.1| Y53F4B.17 [Caenorhabditis elegans] 2.0E-56
blast CAC35850 Hypothetical protein Y111B2A.21 [Caenorhabditis elegans] ref|NP_499655.1| Y111B2A.21 [Caenorhabditis elegans] 4.0E-13
Protein Domains
Database ID Description E-Value
Pfam IPR000120 EMBL-EBI Amidase 5.0E-50
Sequence
Target Sequence 
>C. ELEGANS:185509_AT
tggagtcgatctggtaccactcgatgcccctgatgaacaatgtccccaaaaaagtcgcga
agtttgcagtcaagaccagcgaatcggcggctaaaattcaagccatcatcgatcaatccg
agtggctcgatgtattcctggtcgagacgatgcctacgagcggctttttttgggcttcga
cgcctgtggaggaagtggtgagggcttgcgtccttgcacacttcttcaaggtgcacgcag
tcgatgggatgttgttggaggaccaggaatacttcaggatgccgctccaagatccgagaa
cgatgaaggagatgaaggggaaactgtcgaaaatcggatggggtgtgcttcggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGGAGTCGATCTGGTACCACTCGAT 336 549 542 Antisense
ACTCGATGCCCCTGATGAACAATGT 49 99 560 Antisense
GTCAAGACCAGCGAATCGGCGGCTA 515 463 610 Antisense
AAGCCATCATCGATCAATCCGAGTG 138 149 641 Antisense
CGAGTGGCTCGATGTATTCCTGGTC 124 251 660 Antisense
GGTCGAGACGATGCCTACGAGCGGC 629 501 681 Antisense
TACGAGCGGCTTTTTTTGGGCTTCG 4 645 696 Antisense
GAGGAAGTGGTGAGGGCTTGCGTCC 444 405 730 Antisense
AGGTGCACGCAGTCGATGGGATGTT 585 57 770 Antisense
AATACTTCAGGATGCCGCTCCAAGA 704 171 809 Antisense
AAAATCGGATGGGGTGTGCTTCGGC 391 133 871 Antisense
Sequence Source Affymetrix Proprietary Database