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[185508_s_at]

Description B0432.12 /REP_DB=WormBase Gene ID /WP=CE07750 /TR=P90996 /GB=AAB37896.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 66      4grp_total > 37      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 13.5
(3)
A 		9
(0)
A 		4.5
(-3)
A 		6.6
(-1.6)
A 		9
B 3.8
(3)
A 		2.8
(-3)
A 		3.6
(1.8)
A 		3.2
(-0.6)
A 		1
C 4.5
(-0.9)
A 		8
(3)
A 		2.6
(-3)
A 		6.3
(1.1)
A 		5
avr 7.3
(3) 		6.6
(1.9) 		3.6
(-3) 		5.4
(-0.1) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 2.8
(-2.7)
A 		4.9
(-2.1)
A 		9.1
(-1)
A 		3.9
(-2.4)
A 		1.8
(-3)
A 		23.3
(3)
A 		22
B 3
(-3)
A 		18.9
(3)
A 		3.9
(-2.7)
A 		6.5
(-1.7)
A 		8.1
(-1.1)
A 		15.7
(1.8)
A 		16
C 3.9
(-2.5)
A 		2.1
(-3)
A 		2.9
(-2.8)
A 		3.8
(-2.6)
A 		4.6
(-2.4)
A 		25.6
(3)
A 		24
avr 3.2
(-3) 		8.6
(-1.2) 		5.3
(-2.3) 		4.7
(-2.5) 		4.8
(-2.5) 		21.5
(3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 4.9
(3)
A 		2
(-1.5)
A 		1.2
(-2.7)
A 		1
(-3)
A 		4
B 1.2
(3)
A 		0.7
(-3)
A 		0.8
(-1.8)
A 		0.7
(-3)
A 		1
C 1.5
(-0.4)
A 		2.3
(3)
A 		0.9
(-3)
A 		1.1
(-2.1)
A 		1
avr 2.5
(3) 		1.7
(-0) 		1
(-2.6) 		0.9
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 0.5
(-3)
A 		1.7
(-1.6)
A 		2
(-1.3)
A 		1
(-2.4)
A 		0.5
(-3)
A 		5.7
(3)
A 		5
B 1
(-3)
A 		6.3
(3)
A 		1
(-3)
A 		1.7
(-2.2)
A 		3.3
(-0.4)
A 		5.9
(2.5)
A 		5
C 1.4
(-2.4)
A 		0.6
(-3)
A 		0.7
(-2.9)
A 		0.8
(-2.9)
A 		1.5
(-2.3)
A 		8.6
(3)
A 		8
avr 1
(-3) 		2.9
(-1) 		1.2
(-2.8) 		1.2
(-2.8) 		1.8
(-2.2) 		6.7
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185508_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5138
Sequence Type Exemplar sequence
Representative Public ID B0432.12 NCBI
Target Description B0432.12 /REP_DB=WormBase Gene ID /WP=CE07750 /TR=P90996 /GB=AAB37896.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061297(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061297 NCBI Caenorhabditis elegans B0432.12 (B0432.12) mRNA, complete cds. 11/11 None
SNAP00000033642 ENSEMBL cdna:SNAP chromosome:CEL140:II:296290:297009:-1 11/11 None
GENEFINDER00000033645 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:296290:297009:-1 11/11 None
B0432.12 ENSEMBL cdna:known chromosome:CEL140:II:296290:297009:-1 gene:B0432.12 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:296289-297009(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0432.12
Entrez Gene 173417 Entrez gene
SwissProt P90996 EMBL-EBI
WormBase CE07750 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB37896 Hypothetical protein B0432.12 [Caenorhabditis elegans] ref|NP_493698.1| B0432.12 [Caenorhabditis elegans] 1.0E-111
blast AAC24390 Hypothetical protein F47C12.4 [Caenorhabditis elegans] ref|NP_500450.1| F47C12.4 [Caenorhabditis elegans] 3.0E-27
blast CAE71799 Hypothetical protein CBG18810 [Caenorhabditis briggsae] 2.0E-24
Protein Domains
Database ID Description E-Value
Pfam IPR001304 EMBL-EBI C-type lectin 1.0E-6
Sequence
Target Sequence 
>C. ELEGANS:185508_S_AT
cctgctctggatctcgacgggatccacggctccagccggtgttgccacgtatttgagatc
caatggaattgtggctttccacaagttatatcacctgaagatgaacttcccgagagccaa
aaaacactgtgagcagaatggagctcatctggcggggatcacatctagagaagaggctca
gaagttgatagacctcgcaaacgaagccggtgaaagtaacgaacaatactggctcggcgg
tcaacggaaaggagaatgctacggaatgcgcaactacgacaaggatcacggactcaatgc
cacttgctcattgagcaacgtggttcaatggttggataacgtggcggaaaccattgatcc
ggattggtggaagatccctggaccatcgcatatccctttcaatatgcctcagcagtgtct
atcgtttgtgcatggagaccgggattggacaactccgaatgatccgggattcttggatga
tattggttgtgatgttccgcgaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCTGCTCTGGATCTCGACGGGATCC 177 267 36 Antisense
GGTGTTGCCACGTATTTGAGATCCA 204 501 73 Antisense
GCTTTCCACAAGTTATATCACCTGA 73 305 109 Antisense
AAGATGAACTTCCCGAGAGCCAAAA 270 155 133 Antisense
AGAATGGAGCTCATCTGGCGGGGAT 592 75 170 Antisense
TAGACCTCGCAAACGAAGCCGGTGA 494 647 224 Antisense
CTGGCTCGGCGGTCAACGGAAAGGA 356 235 264 Antisense
GCTACGGAATGCGCAACTACGACAA 143 301 293 Antisense
ATATGCCTCAGCAGTGTCTATCGTT 442 21 437 Antisense
GACAACTCCGAATGATCCGGGATTC 243 365 483 Antisense
ATATTGGTTGTGATGTTCCGCGAAA 699 17 515 Antisense
Sequence Source Affymetrix Proprietary Database