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[185504_at]

Description F23H11.6 /REP_DB=WormBase Gene ID /WP=CE09614 /TR=O01919 /GB=AAC71134.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 03      4grp_total > 43      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 147
1 2 3 4 range
A 71.6
(-1.8)
P 		152.8
(3)
M 		51.3
(-3)
A 		62.6
(-2.3)
A 		102
B 73.8
(0.9)
P 		111.3
(3)
A 		72
(0.8)
A 		5.5
(-3)
A 		106
C 88.5
(-1.5)
P 		88.9
(-1.1)
A 		87
(-3)
A 		93
(3)
A 		6
avr 78
(-0.7) 		117.7
(3) 		70.1
(-1.5) 		53.7
(-3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 51
1 2 3 4 5 6 range
A 68.2
(3)
A 		41.1
(-0.6)
A 		23.1
(-3)
A 		43.3
(-0.3)
A 		41.2
(-0.6)
A 		33.8
(-1.6)
A 		45
B 54.5
(1.5)
A 		60.3
(2.2)
A 		45.1
(0.3)
A 		48.1
(0.7)
A 		66.9
(3)
A 		17.7
(-3)
A 		49
C 43.3
(-1)
A 		51.1
(0.7)
M 		50.3
(0.5)
A 		61.6
(3)
A 		44.7
(-0.7)
A 		34.3
(-3)
A 		27
avr 55.3
(3) 		50.8
(2) 		39.5
(-0.6) 		51
(2) 		50.9
(2) 		28.6
(-3) 		27
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 26.1
(1.2)
P 		33.2
(3)
M 		13.4
(-2)
A 		9.2
(-3)
A 		24
B 23.5
(2.1)
P 		27.5
(3)
A 		16.7
(0.5)
A 		1.2
(-3)
A 		26
C 29.3
(2.6)
P 		25.5
(1)
A 		30.3
(3)
A 		15.7
(-3)
A 		15
avr 26.3
(2.3) 		28.7
(3) 		20.1
(0.4) 		8.7
(-3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 12.6
(1.8)
A 		14.6
(3)
A 		5
(-3)
A 		11
(0.8)
A 		12.4
(1.6)
A 		8.2
(-1)
A 		10
B 19
(0.6)
A 		20.1
(0.9)
A 		11
(-1.7)
A 		12.7
(-1.2)
A 		27.2
(3)
A 		6.6
(-3)
A 		21
C 16
(3)
A 		15.6
(2.5)
M 		12.8
(-1.3)
A 		12.4
(-1.8)
A 		14.5
(1)
A 		11.5
(-3)
A 		5
avr 15.9
(1.6) 		16.8
(2.2) 		9.6
(-2.5) 		12
(-0.9) 		18
(3) 		8.8
(-3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185504_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8200
Sequence Type Exemplar sequence
Representative Public ID F23H11.6 NCBI
Target Description F23H11.6 /REP_DB=WormBase Gene ID /WP=CE09614 /TR=O01919 /GB=AAC71134.1 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064892(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064892 NCBI Caenorhabditis elegans F23H11.6 (F23H11.6) mRNA, complete cds. 11/11 None
F23H11.6 ENSEMBL cdna:known chromosome:CEL140:III:913235:915702:-1 gene:F23H11.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:913234-915702(-) 99.88 100.0
Public Domain and Genome References
Gene Title
Ensembl F23H11.6
Entrez Gene 184909 Entrez gene
SwissProt O01919 EMBL-EBI
WormBase CE09614 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC71134 Hypothetical protein F23H11.6 [Caenorhabditis elegans] ref|NP_497293.1| F23H11.6 [Caenorhabditis elegans] 1.0E-121
blast CAE69138 Hypothetical protein CBG15168 [Caenorhabditis briggsae] 4.0E-51
Sequence
Target Sequence 
>C. ELEGANS:185504_AT
caatatcgcctattcagtggccaacacttgatgcaaacttttgggtttaaaaatctgaat
cttccgactctacccccattacaaataccaactctagatccaaacttttggaaaaatctg
ccaactattcccccatttgtttttccgactccggcgcctcgagaatctcagtgcacctat
aagcttagtcaggaacttcagaacaatgcaacaatggcggcaagattgaattacatgcaa
gttgagcaagttctgaatcgtctgttattggagtccacgtggatctgtaatggttttcag
acacagaagctgactgatttgacgaaaaaatacgcagtgttgcaaagtgatatgcagacg
gtaacttcttatttctcaacttctgatctccagcaactacttttatcgattctacaaggc
gatacaagccaagtttttcggctatttttctcgaaaacaatggaaaatctggcgaattct
acaatcactggcgagctttctaaggcgtccacacaactatcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAATATCGCCTATTCAGTGGCCAAC 245 181 304 Antisense
AAAATCTGAATCTTCCGACTCTACC 489 133 353 Antisense
TCTACCCCCATTACAAATACCAACT 697 593 372 Antisense
CGCCTCGAGAATCTCAGTGCACCTA 506 257 458 Antisense
TGAATCGTCTGTTATTGGAGTCCAC 168 575 557 Antisense
GACGGTAACTTCTTATTTCTCAACT 4 377 660 Antisense
TCTCAACTTCTGATCTCCAGCAACT 392 613 677 Antisense
TCCAGCAACTACTTTTATCGATTCT 13 591 692 Antisense
GCGAATTCTACAATCACTGGCGAGC 95 289 775 Antisense
ACTGGCGAGCTTTCTAAGGCGTCCA 148 97 790 Antisense
TCTAAGGCGTCCACACAACTATCGA 133 611 802 Antisense
Sequence Source Affymetrix Proprietary Database