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[185503_at]

Description Y53F4B.21 /REP_DB=WormBase Gene ID /WP=CE22385 /TR=Q9NA99 /GB=CAB61092.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 70      4grp_total > 15      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 78
1 2 3 4 range
A 71.7
(2)
A 		6.7
(-3)
A 		27.3
(-1.4)
A 		84.8
(3)
A 		78
B 41.7
(1.5)
A 		22.5
(-3)
A 		24.3
(-2.6)
A 		48.1
(3)
A 		26
C 64.5
(1.3)
A 		32.7
(-3)
A 		39.1
(-2.1)
A 		76.9
(3)
A 		44
avr 59.3
(1.7) 		20.6
(-3) 		30.2
(-1.8) 		69.9
(3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 24.4
(-0.9)
A 		24.9
(-0.8)
A 		53.2
(3)
M 		8.6
(-3)
A 		12.3
(-2.5)
A 		34.2
(0.4)
A 		45
B 17.8
(-1.6)
A 		46.5
(1.8)
A 		6.2
(-3)
A 		56.7
(3)
A 		18.1
(-1.6)
A 		13.1
(-2.2)
A 		51
C 34.7
(-0.6)
A 		32.1
(-0.8)
A 		24
(-1.4)
A 		84.7
(3)
A 		18
(-1.8)
A 		1.2
(-3)
A 		84
avr 25.6
(-1.3) 		34.5
(0.3) 		27.8
(-0.9) 		50
(3) 		16.1
(-3) 		16.2
(-3) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 26.1
(3)
A 		1.5
(-3)
A 		7.1
(-1.6)
A 		12.4
(-0.3)
A 		25
B 13.3
(3)
A 		5.5
(-3)
A 		5.6
(-2.9)
A 		10.3
(0.7)
A 		8
C 21.4
(3)
A 		9.4
(-3)
A 		13.6
(-0.9)
A 		13
(-1.2)
A 		12
avr 20.3
(3) 		5.5
(-3) 		8.8
(-1.7) 		11.9
(-0.4) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 4.5
(-1.5)
A 		8.9
(1.3)
A 		11.6
(3)
M 		2.2
(-3)
A 		3.7
(-2)
A 		8.3
(0.9)
A 		9
B 6.2
(-1)
A 		15.5
(3)
A 		1.5
(-3)
A 		15
(2.8)
A 		7.4
(-0.5)
A 		4.9
(-1.5)
A 		14
C 12.9
(1.5)
A 		9.8
(0.4)
A 		6.1
(-0.9)
A 		17
(3)
A 		5.8
(-1)
A 		0.4
(-3)
A 		17
avr 7.9
(-0) 		11.4
(3) 		6.4
(-1.3) 		11.4
(3) 		5.6
(-2) 		4.5
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185503_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3102
Sequence Type Exemplar sequence
Representative Public ID Y53F4B.21 NCBI
Target Description Y53F4B.21 /REP_DB=WormBase Gene ID /WP=CE22385 /TR=Q9NA99 /GB=CAB61092.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Consensus/Exemplar Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade C annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064705
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000043122 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:15090070:15105483:1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:15090066-15105480(+) 82.06 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB61092 Hypothetical protein Y53F4B.21 [Caenorhabditis elegans] ref|NP_497106.1| Y53F4B.21 [Caenorhabditis elegans] 0.0
blast CAE73461 Hypothetical protein CBG20911 [Caenorhabditis briggsae] 1.0E-126
blast CAF98253 unnamed protein product [Tetraodon nigroviridis] 5.0E-27
Sequence
Target Sequence 
>C. ELEGANS:185503_AT
ccggtaattcggcaaatcagcaatttgccgatttcccgatttttcggaaaaacggcaatt
gccgaaaatgaaaaattccgcaaaccagcaatttgccgatttaccgaaattttaggaaaa
cggcaattgccggaattgaaatttctggaaaactggcaaattgccggaattgaacatttc
ccgccaatcgccgatttttcggaagaaacggcatttgccgaatatgaaaaattccggcaa
agcggaacattgccggaattgaaatttccggcaaagcgggcaattgccggaattggaatt
tccggcaaattggcaaattgccggaatggaaaatgtccgataattcagcaaaccagcaat
ttgccgatttcccgatttttcggaaaaaacgacaattgccggaattggaatttccggcaa
aatgccataattgaaaatttccggccaatcgccaatttgccgatttttcggaagaaacgg
caattgccgaatatgaaaaattccggcaaatcgtcaaattgccagaatggaacatttccg
gcaaaccggctatgtatctttaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCGGTAATTCGGCAAATCAGCAATT 533 1 2830 Antisense
ATTCCGCAAACCAGCAATTTGCCGA 169 9 2904 Antisense
GCCGGAATTGAACATTTCCCGCCAA 309 269 2992 Antisense
TCCCGCCAATCGCCGATTTTTCGGA 195 597 3008 Antisense
AAAGCGGAACATTGCCGGAATTGAA 640 123 3068 Antisense
GAAATTTCCGGCAAAGCGGGCAATT 674 347 3090 Antisense
ATGTCCGATAATTCAGCAAACCAGC 372 49 3162 Antisense
TGAAAATTTCCGGCCAATCGCCAAT 348 573 3261 Antisense
TCCGGCCAATCGCCAATTTGCCGAT 220 595 3269 Antisense
ATTGCCAGAATGGAACATTTCCGGC 421 7 3347 Antisense
CGGCAAACCGGCTATGTATCTTTAA 73 243 3368 Antisense
Sequence Source Affymetrix Proprietary Database