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[185502_at]

Description Y75B12B.1 /REP_DB=WormBase Gene ID /WP=CE20370 /TR=Q9XWB8 /GB=CAA21764.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 88      6grp_total > 87      4grp_total > 32      6grp_high1_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 51.5
(-2.2)
A 		54.3
(-1.3)
A 		68.2
(3)
A 		48.8
(-3)
A 		19
B 48
(-0.4)
P 		30.5
(-3)
A 		71.2
(3)
P 		49.3
(-0.2)
A 		41
C 23.7
(-3)
A 		32.1
(-1.4)
M 		41.7
(0.4)
P 		55.8
(3)
P 		32
avr 41.1
(-2.4) 		39
(-3) 		60.4
(3) 		51.3
(0.4) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 796
1 2 3 4 5 6 range
A 66.5
(-2.8)
P 		45.1
(-3)
P 		60.1
(-2.8)
P 		121.6
(-2.2)
P 		387.1
(0.5)
P 		633.9
(3)
P 		589
B 65.7
(-2.7)
P 		37
(-3)
P 		32.9
(-3)
P 		148.9
(-2)
P 		388.6
(-0.1)
P 		759.1
(3)
P 		726
C 19.3
(-3)
P 		50.1
(-2.8)
A 		57.1
(-2.7)
P 		124.2
(-2.2)
P 		455.6
(0.3)
P 		815.3
(3)
P 		796
avr 50.5
(-2.9) 		44.1
(-3) 		50
(-2.9) 		131.6
(-2.2) 		410.4
(0.2) 		736.1
(3) 		692
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 18.7
(3)
A 		11.8
(-0.6)
A 		17.8
(2.5)
A 		7.1
(-3)
A 		12
B 15.3
(2.2)
P 		7.5
(-3)
A 		16.5
(3)
P 		10.5
(-1)
A 		9
C 7.9
(-3)
A 		9.2
(-1.8)
M 		14.5
(3)
P 		9.4
(-1.6)
P 		7
avr 14
(1.1) 		9.5
(-2.6) 		16.3
(3) 		9
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 276
1 2 3 4 5 6 range
A 12.3
(-3)
P 		16.1
(-2.8)
P 		13.1
(-3)
P 		30.8
(-2.2)
P 		116.8
(1.4)
P 		154.3
(3)
P 		142
B 22.9
(-2.7)
P 		12.3
(-2.9)
P 		8
(-3)
P 		39.4
(-2.3)
P 		157.9
(0.3)
P 		283.1
(3)
P 		275
C 7.1
(-3)
P 		15.3
(-2.8)
A 		14.5
(-2.8)
P 		25
(-2.6)
P 		147.4
(0.2)
P 		272.9
(3)
P 		266
avr 14.1
(-2.9) 		14.6
(-2.9) 		11.9
(-3) 		31.7
(-2.5) 		140.7
(0.4) 		236.8
(3) 		225
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185502_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13277
Sequence Type Exemplar sequence
Representative Public ID Y75B12B.1 NCBI
Target Description Y75B12B.1 /REP_DB=WormBase Gene ID /WP=CE20370 /TR=Q9XWB8 /GB=CAA21764.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074346(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074346 NCBI Caenorhabditis elegans Y75B12B.1 (Y75B12B.1) mRNA, complete cds. 11/11 None
SNAP00000027054 ENSEMBL cdna:SNAP chromosome:CEL140:V:15187295:15188374:1 10/11 None
Y75B12B.1 ENSEMBL cdna:known chromosome:CEL140:V:15187295:15188374:1 gene:Y75B12B.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000027071 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15187294-15188374(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y75B12B.1
Entrez Gene 190716 Entrez gene
SwissProt Q9XWB8 EMBL-EBI
WormBase CE20370 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA21764 Hypothetical protein Y75B12B.1 [Caenorhabditis elegans] ref|NP_506747.1| Y75B12B.1 [Caenorhabditis elegans] 1.0E-155
blast CAA21764 Hypothetical protein Y75B12B.1 [Caenorhabditis elegans] ref|NP_506747.1| Y75B12B.1 [Caenorhabditis elegans] 1.0E-151
blast CAB07211 Hypothetical protein F47H4.4 [Caenorhabditis elegans] ref|NP_507388.1| F47H4.4 [Caenorhabditis elegans] 3.0E-13
blast CAB63202 Hypothetical protein F47H4.6 [Caenorhabditis elegans] ref|NP_507389.1| F47H4.6 [Caenorhabditis elegans] 3.0E-12
Sequence
Target Sequence 
>C. ELEGANS:185502_AT
tcattacttctcctctgtgcaaagatccggaattcgttcgttcttgcgtcctctacgaag
ttttcagtctgaaagactctacccaaggatacaaagatttctgcgatgctctcggaaacg
agtctatgggcgtcagagagttcgacttctggtggaatcgattctacaatggtgatcatg
atttgtgtctcgatatgactgccgcagtcactttgggaagctccggacaagacgatggct
tcacaaatgatggagaggctgaagagacttcgcagcttcaacgtgtttctggagattcta
aatacttgcaaatttatgatgattacggtgatttttcggatgaggaggagcacgtgctga
agatgtgcaaattcggagagcctgctatcagagagttcattgtcgcgaacttttcggctg
aagagatcgtcgatttcagatctcaacttcacgataatctggaagaatacgaagagaaga
acaagccatctctcatcaaaaagctcgtcggaaagataaaagggatcggcgctcggagag
atgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCATTACTTCTCCTCTGTGCAAAGA 331 619 311 Antisense
AAGATCCGGAATTCGTTCGTTCTTG 587 153 332 Antisense
TCTTGCGTCCTCTACGAAGTTTTCA 467 617 352 Antisense
TTTGTGTCTCGATATGACTGCCGCA 267 667 492 Antisense
GACTGCCGCAGTCACTTTGGGAAGC 469 369 507 Antisense
GCTCCGGACAAGACGATGGCTTCAC 338 299 530 Antisense
ACTTCGCAGCTTCAACGTGTTTCTG 4 105 577 Antisense
TCATTGTCGCGAACTTTTCGGCTGA 12 619 707 Antisense
GTCGATTTCAGATCTCAACTTCACG 581 473 739 Antisense
GAAGAACAAGCCATCTCTCATCAAA 611 339 786 Antisense
AGGGATCGGCGCTCGGAGAGATGAT 581 57 831 Antisense
Sequence Source Affymetrix Proprietary Database