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[185501_at]

Description C24D10.4 /REP_DB=WormBase Gene ID /WP=CE16876 /TR=O44134 /GB=AAB88313.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 86      6grp_high1_10_10 > 76      4grp_highest_8_8 > 16      4grp_high_8_8 > 60      6grp_highest_nonorm > 85      6grp_total > 67      4grp_total > 59      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 397
1 2 3 4 range
A 675.4
(-0.3)
P 		752.7
(0.9)
P 		890.4
(3)
P 		493.5
(-3)
P 		397
B 735.4
(1.1)
P 		791.2
(2.1)
P 		838.7
(3)
P 		504.9
(-3)
P 		334
C 796.8
(2.8)
P 		806
(3)
P 		717.3
(1.1)
P 		531.1
(-3)
P 		275
avr 735.9
(1.4) 		783.3
(2.4) 		815.5
(3) 		509.8
(-3) 		306

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 294
1 2 3 4 5 6 range
A 750.9
(1.3)
P 		708.5
(-0.2)
P 		770.3
(1.9)
P 		626.1
(-3)
P 		795.4
(2.8)
P 		801.4
(3)
P 		175
B 759.7
(-2)
P 		823.5
(0.2)
P 		766.7
(-1.8)
P 		858
(1.4)
P 		730.8
(-3)
P 		904.6
(3)
P 		174
C 628.3
(-2.6)
P 		684.3
(-1.3)
P 		680.8
(-1.4)
P 		610.6
(-3)
P 		687.5
(-1.2)
P 		873.8
(3)
P 		263
avr 713
(-2.5) 		738.8
(-1.5) 		739.3
(-1.5) 		698.2
(-3) 		737.9
(-1.5) 		859.9
(3) 		162
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 192
1 2 3 4 range
A 245.9
(3)
P 		163.4
(0.2)
P 		232.8
(2.5)
P 		72.2
(-3)
P 		174
B 234.5
(3)
P 		195.4
(1.2)
P 		194.3
(1.1)
P 		107.6
(-3)
P 		127
C 263.8
(3)
P 		231.7
(1.9)
P 		250
(2.5)
P 		89.5
(-3)
P 		174
avr 248.1
(3) 		196.8
(1.1) 		225.7
(2.2) 		89.8
(-3) 		158

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 215
1 2 3 4 5 6 range
A 138.4
(-3)
P 		252
(3)
P 		167.8
(-1.4)
P 		158.8
(-1.9)
P 		240
(2.4)
P 		195.1
(-0)
P 		114
B 264.3
(0.1)
P 		274.1
(0.5)
P 		186.2
(-3)
P 		227.3
(-1.4)
P 		296.9
(1.4)
P 		337.3
(3)
P 		151
C 232.9
(0.9)
P 		208.8
(0)
P 		173.3
(-1.2)
P 		122.8
(-3)
P 		222.5
(0.5)
P 		292.5
(3)
P 		170
avr 211.9
(-0.6) 		245
(1.3) 		175.8
(-2.6) 		169.6
(-3) 		253.1
(1.8) 		275
(3) 		105
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185501_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10984
Sequence Type Exemplar sequence
Representative Public ID C24D10.4 NCBI
Target Description C24D10.4 /REP_DB=WormBase Gene ID /WP=CE16876 /TR=O44134 /GB=AAB88313.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068328(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068328 NCBI Caenorhabditis elegans C24D10.4 (C24D10.4) mRNA, complete cds. 11/11 None
SNAP00000024205 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5160513:5161325:1 11/11 None
GENEFINDER00000024213 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5160513:5161325:1 11/11 None
C24D10.4 ENSEMBL cdna:known chromosome:CEL140:IV:5160513:5161325:1 gene:C24D10.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5160518-5161331(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C24D10.4
Entrez Gene 177288 Entrez gene
SwissProt O44134 EMBL-EBI
WormBase CE16876 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB88313 Hypothetical protein C24D10.4 [Caenorhabditis elegans] ref|NP_500729.1| C24D10.4 [Caenorhabditis elegans] 1.0E-116
blast CAE72753 Hypothetical protein CBG20001 [Caenorhabditis briggsae] 2.0E-81
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500729.1 2 138-160,197-219
C24D10.4 2 138-160,197-219
SNAP00000024205 2 138-160,197-219
GENEFINDER00000024213 2 138-160,197-219
Sequence
Target Sequence 
>C. ELEGANS:185501_AT
atggcaaacgacatgctcctgcaattgagggcggcgagggctacaatattttgccgactc
caagctcatctgatagcgtcactgttccacaaaattctgagttccccggatttcccagcg
aatttccagctggattccccgcagatattgctcaatttgctcaattttctgatggaatgg
gcaatctgaacactaatcgaggaccccctccacctccagttaaaggaataaatgttccac
tagtggcaatcattcttggacttctttctcgtgcaattatgcttctcacaggaccaataa
atatcggaatactttgggcaatcttctacgtcactcttgtttctcgattctcggctgtcg
gtttgaataatcaaacaagaaacgaacttgctgctgtttttcaagcaatggggaataata
atcaatttgaaaaaattatgaatgcgggtttcaaaatcattgaattcatccaaacgaccg
tctccttcgccgccagcttccttctcgcccatatgatacttgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGCAAACGACATGCTCCTGCAAT 203 53 152 Antisense
CCGACTCCAAGCTCATCTGATAGCG 588 263 205 Antisense
ATCTGATAGCGTCACTGTTCCACAA 154 35 219 Antisense
GTTCCACAAAATTCTGAGTTCCCCG 107 441 235 Antisense
CCGGATTTCCCAGCGAATTTCCAGC 150 231 257 Antisense
CTGGATTCCCCGCAGATATTGCTCA 423 239 281 Antisense
ATCTGAACACTAATCGAGGACCCCC 567 33 335 Antisense
CAATCATTCTTGGACTTCTTTCTCG 556 181 398 Antisense
GCAATTATGCTTCTCACAGGACCAA 622 321 424 Antisense
TACTTTGGGCAATCTTCTACGTCAC 334 645 461 Antisense
CCTTCTCGCCCATATGATACTTGAA 679 269 651 Antisense
Sequence Source Affymetrix Proprietary Database