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[185500_at]

Description F08D12.5 /REP_DB=WormBase Gene ID /WP=CE09238 /TR=P91235 /GB=AAB37928.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 0      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 3.9
(-2.4)
A 		3
(-3)
A 		12.5
(3)
A 		6.9
(-0.5)
A 		10
B 1.1
(-3)
A 		9.1
(-0.8)
A 		23.2
(3)
A 		2.3
(-2.7)
A 		22
C 19.7
(0.3)
A 		4.6
(-2.6)
A 		2.7
(-3)
A 		33.7
(3)
A 		31
avr 8.2
(-1.2) 		5.6
(-3) 		12.8
(2) 		14.3
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 2.8
(-2.4)
A 		2
(-2.9)
A 		3.2
(-2.1)
A 		3
(-2.3)
A 		10.9
(3)
A 		1.9
(-3)
A 		9
B 1.8
(-2.8)
A 		1.9
(-2.8)
A 		13.4
(0.5)
A 		1.2
(-3)
A 		22
(3)
A 		3.6
(-2.3)
A 		21
C 1.6
(-1.9)
A 		1.4
(-2.4)
A 		1.9
(-1)
A 		2.7
(1.3)
A 		1.2
(-3)
A 		3.3
(3)
A 		2
avr 2.1
(-2.8) 		1.8
(-3) 		6.2
(-0.3) 		2.3
(-2.7) 		11.4
(3) 		2.9
(-2.3) 		10
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 1.4
(-1.2)
A 		0.6
(-3)
A 		3.3
(3)
A 		1
(-2.1)
A 		3
B 0.3
(-3)
A 		2.3
(-0.6)
A 		5.4
(3)
A 		0.5
(-2.8)
A 		5
C 6.5
(3)
A 		1.3
(-2.6)
A 		0.9
(-3)
A 		5.7
(2.1)
A 		6
avr 2.7
(1.3) 		1.4
(-3) 		3.2
(3) 		2.4
(0.3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 0.5
(-3)
A 		0.7
(-2.6)
A 		0.7
(-2.6)
A 		0.8
(-2.4)
A 		3.3
(3)
A 		0.5
(-3)
A 		3
B 0.6
(-2.8)
A 		0.6
(-2.8)
A 		3.2
(-1)
A 		0.3
(-3)
A 		8.9
(3)
A 		1.3
(-2.3)
A 		9
C 0.6
(-1.3)
A 		0.4
(-3)
A 		0.5
(-2.1)
A 		0.5
(-2.1)
A 		0.4
(-3)
A 		1.1
(3)
A 		1
avr 0.6
(-2.8) 		0.6
(-2.8) 		1.5
(-1.4) 		0.5
(-3) 		4.2
(3) 		1
(-2.2) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185500_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5622
Sequence Type Exemplar sequence
Representative Public ID F08D12.5 NCBI
Target Description F08D12.5 /REP_DB=WormBase Gene ID /WP=CE09238 /TR=P91235 /GB=AAB37928.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061960
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000023717 ENSEMBL cdna:SNAP chromosome:CEL140:II:2776793:2777336:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_061960 4/11 Cross Hyb Matching Probes None
GENEFINDER00000023732 8/11 Cross Hyb Matching Probes None
F08D12.3b 4/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2776791-2777335(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB37927 Hypothetical protein F08D12.4 [Caenorhabditis elegans] ref|NP_494362.1| F08D12.4 [Caenorhabditis elegans] 4.0E-56
Sequence
Target Sequence 
>C. ELEGANS:185500_AT
gataccttatagtcatggtcatagacttctggccatgttaaacaatgctcatttacagag
atccgtgcctaacaccgacctgagccagcctatcacttcatgcccagcttccacagtgac
acttccaacctgtgaagttgggtggaagctgttcccacgctacgatacttatttgtgtct
aacgctaggcatcaatcgaaaggaacgtgacggatacttattacagtttgatcaaatttc
cagttatgttgcttgcagatgggatggatcgaagttcatagatggtatattaagtgggct
ggagagcgatgaggagagagcttacgcgtcggaccgagcttatcaaataatgctacagaa
catgaacgagacattgttcgaattcccatcaagtgagcgactgggctggg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATACCTTATAGTCATGGTCATAGA 397 425 15 Antisense
TGGTCATAGACTTCTGGCCATGTTA 421 551 30 Antisense
GACTTCTGGCCATGTTAAACAATGC 661 371 38 Antisense
ACAATGCTCATTTACAGAGATCCGT 582 111 56 Antisense
TACAGAGATCCGTGCCTAACACCGA 89 643 68 Antisense
GTGACACTTCCAACCTGTGAAGTTG 588 481 130 Antisense
TGTTCCCACGCTACGATACTTATTT 670 561 164 Antisense
ATTTGTGTCTAACGCTAGGCATCAA 627 17 185 Antisense
GATCAAATTTCCAGTTATGTTGCTT 515 421 244 Antisense
GACATTGTTCGAATTCCCATCAAGT 400 371 384 Antisense
CCATCAAGTGAGCGACTGGGCTGGG 107 271 400 Antisense
Sequence Source Affymetrix Proprietary Database