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[185499_at]

Description D1007.13 /REP_DB=WormBase Gene ID /WP=CE09048 /TR=O01875 /GB=AAK18918.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 84      4grp_total > 50      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 299
1 2 3 4 range
A 135.2
(-1.6)
A 		337.5
(3)
P 		287.5
(1.9)
P 		73.8
(-3)
A 		264
B 91.6
(-1.5)
A 		249.5
(3)
M 		220.3
(2.2)
A 		38.2
(-3)
A 		211
C 112.1
(-3)
A 		285.1
(3)
A 		174.2
(-0.8)
M 		118.1
(-2.8)
A 		173
avr 113
(-2) 		290.7
(3) 		227.3
(1.2) 		76.7
(-3) 		214

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 354
1 2 3 4 5 6 range
A 155.4
(-2.5)
A 		167.8
(-2.2)
P 		134.4
(-3)
A 		394.5
(3)
P 		394.2
(3)
P 		366.6
(2.4)
P 		260
B 101
(-3)
A 		218.2
(-0.6)
P 		250.8
(0)
P 		396
(3)
P 		339.3
(1.8)
P 		318.4
(1.4)
P 		295
C 52.5
(-3)
A 		195.2
(-0.6)
P 		172.7
(-1)
A 		375.4
(2.5)
P 		406.1
(3)
P 		286.3
(1)
P 		354
avr 103
(-3) 		193.7
(-1.1) 		186
(-1.3) 		388.6
(3) 		379.9
(2.8) 		323.8
(1.6) 		286
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 49.2
(0.6)
A 		73.3
(2.8)
P 		75.2
(3)
P 		10.8
(-3)
A 		64
B 29.2
(-0.6)
A 		61.6
(3)
M 		51.1
(1.8)
A 		8.1
(-3)
A 		54
C 37.1
(-1.3)
A 		82
(3)
A 		60.7
(0.9)
M 		19.9
(-3)
A 		62
avr 38.5
(-0.4) 		72.3
(3) 		62.3
(2) 		12.9
(-3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 119
1 2 3 4 5 6 range
A 28.6
(-3)
A 		59.7
(-0.9)
P 		29.3
(-3)
A 		100
(1.7)
P 		118.9
(3)
P 		89.3
(1)
P 		90
B 35.1
(-3)
A 		72.6
(-0.8)
P 		60.9
(-1.5)
P 		104.9
(1.1)
P 		137.9
(3)
P 		118.7
(1.9)
P 		103
C 19.4
(-3)
A 		59.6
(-0.8)
P 		43.9
(-1.7)
A 		75.5
(0)
P 		131.4
(3)
P 		95.9
(1.1)
P 		112
avr 27.7
(-3) 		64
(-0.9) 		44.7
(-2) 		93.5
(0.9) 		129.4
(3) 		101.3
(1.3) 		102
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185499_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1043
Sequence Type Exemplar sequence
Representative Public ID D1007.13 NCBI
Target Description D1007.13 /REP_DB=WormBase Gene ID /WP=CE09048 /TR=O01875 /GB=AAK18918.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058991(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058991 NCBI Caenorhabditis elegans D1007.13 (D1007.13) mRNA, complete cds. 11/11 None
D1007.13 ENSEMBL cdna:known chromosome:CEL140:I:4566738:4568313:1 gene:D1007.13 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000011275 7/11 Cross Hyb Matching Probes None
GENEFINDER00000011307 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4566737-4568313(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl D1007.13
Entrez Gene 183890 Entrez gene
SwissProt O01875 EMBL-EBI
WormBase CE09048 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK18918 Hypothetical protein D1007.13 [Caenorhabditis elegans] ref|NP_491392.1| D1007.13 [Caenorhabditis elegans] 1.0E-102
blast CAE74504 Hypothetical protein CBG22255 [Caenorhabditis briggsae] 2.0E-13
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491392.1 1 2-24
D1007.13 1 2-24
Sequence
Target Sequence 
>C. ELEGANS:185499_AT
tcagcagattccccggatttacatctcctcaacgtcagccaccctcccaacctcgtgtat
ttaatagttatggtcaagaagccgaaacatttggctcagcgatcggaaaatcaatcggga
ggagaattcaacaggcaatggcagcacaagacccagcatttgacatcgagtttgcacaac
catcatctccagcatccacatcatctaccgcatattccccaccgcctgccacgtcatcca
caacatatggatcctcgatcccatccacatatcccccatcaacttttgctccatcagcat
acccaacttcttcatcatggggttcaacacatccaccagaagatcttccaactgttcaac
aagcattccaacaacagcaacaatcatatggaacagttcaacctcaagtttcacttgcgc
aaagtttaatcggaaactcaaacggattcggtggattaccgggacttttgcctccaccaa
gtaacggagactgtccatggtgttcag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAGCAGATTCCCCGGATTTACATC 380 625 248 Antisense
CCTCCCAACCTCGTGTATTTAATAG 207 267 290 Antisense
GCCGAAACATTTGGCTCAGCGATCG 391 285 328 Antisense
AACAGGCAATGGCAGCACAAGACCC 293 135 377 Antisense
AAGACCCAGCATTTGACATCGAGTT 440 153 395 Antisense
TCGAGTTTGCACAACCATCATCTCC 84 603 413 Antisense
ACATATGGATCCTCGATCCCATCCA 170 105 490 Antisense
ATCATGGGGTTCAACACATCCACCA 668 29 561 Antisense
ACACATCCACCAGAAGATCTTCCAA 632 109 574 Antisense
GGAACAGTTCAACCTCAAGTTTCAC 475 529 637 Antisense
AACGGAGACTGTCCATGGTGTTCAG 512 143 730 Antisense
Sequence Source Affymetrix Proprietary Database