[Home] | [Total List]

[185498_at]

Description Y106G6D.6 /REP_DB=WormBase Gene ID /WP=CE19304 /TR=Q9XX58 /GB=CAA20979.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 66      6grp_high1_10_10 > 76      4grp_highest_8_8 > 07      4grp_high_8_8 > 21      6grp_highest_nonorm > 95      6grp_total > 66      4grp_total > 18      6grp_highest_sub > Da      6grp_high1_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 980
1 2 3 4 range
A 388.7
(-3)
P 		504.4
(-1.8)
P 		457.4
(-2.3)
P 		972.4
(3)
P 		584
B 371.7
(-3)
P 		719.8
(-0.9)
P 		524.2
(-2.1)
P 		1351.3
(3)
P 		980
C 454
(-3)
P 		651.5
(-1.3)
P 		515.8
(-2.5)
P 		1155.1
(3)
P 		701
avr 404.8
(-3) 		625.2
(-1.2) 		499.1
(-2.3) 		1159.6
(3) 		755

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1137
1 2 3 4 5 6 range
A 248.9
(-3)
P 		610
(0.1)
P 		752.4
(1.4)
P 		465.7
(-1.1)
P 		495.4
(-0.9)
P 		938.6
(3)
P 		690
B 450.5
(-2.6)
P 		721.6
(-0.7)
P 		520
(-2.1)
P 		397.8
(-3)
P 		412.8
(-2.9)
P 		1230.3
(3)
P 		833
C 513.2
(-2.6)
P 		683.3
(-1.5)
P 		494.7
(-2.8)
P 		527.4
(-2.5)
P 		457.7
(-3)
P 		1385.7
(3)
P 		928
avr 404.2
(-3) 		671.6
(-0.9) 		589
(-1.6) 		463.6
(-2.5) 		455.3
(-2.6) 		1184.9
(3) 		781
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 179
1 2 3 4 range
A 141.5
(2.9)
P 		109.5
(-3)
P 		119.6
(-1.2)
P 		142.3
(3)
P 		33
B 118.5
(-3)
P 		177.8
(-0.9)
P 		121.5
(-2.9)
P 		288
(3)
P 		170
C 150.3
(-3)
P 		187.3
(2)
P 		179.8
(1)
P 		194.8
(3)
P 		45
avr 136.8
(-3) 		158.2
(-1.2) 		140.3
(-2.7) 		208.4
(3) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 418
1 2 3 4 5 6 range
A 45.9
(-3)
P 		216.9
(2.6)
P 		163.9
(0.9)
P 		118.1
(-0.6)
P 		149.5
(0.4)
P 		228.5
(3)
P 		183
B 156.8
(-2.1)
P 		240.2
(-0.7)
P 		126.3
(-2.6)
P 		105.4
(-3)
P 		167.7
(-1.9)
P 		458.8
(3)
P 		353
C 190.2
(-1.6)
P 		208.5
(-1.3)
P 		125.9
(-2.7)
P 		106.1
(-3)
P 		148.1
(-2.3)
P 		463.9
(3)
P 		358
avr 131
(-2.5) 		221.9
(-0.5) 		138.7
(-2.4) 		109.9
(-3) 		155.1
(-2) 		383.7
(3) 		274
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185498_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.593
Sequence Type Exemplar sequence
Representative Public ID Y106G6D.6 NCBI
Target Description Y106G6D.6 /REP_DB=WormBase Gene ID /WP=CE19304 /TR=Q9XX58 /GB=CAA20979.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060268(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060268 NCBI Caenorhabditis elegans Y106G6D.6 (Y106G6D.6) mRNA, complete cds. 11/11 None
SNAP00000020352 ENSEMBL cdna:SNAP chromosome:CEL140:I:10126263:10127361:-1 10/11 None
GENEFINDER00000020361 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:10126263:10127432:-1 11/11 None
Y106G6D.6 ENSEMBL cdna:known chromosome:CEL140:I:10126201:10130223:-1 gene:Y106G6D.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10126193-10127270(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y106G6D.6
Entrez Gene 190917 Entrez gene
SwissProt Q9XX58 EMBL-EBI
WormBase CE19304 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA20979 Hypothetical protein Y106G6D.6 [Caenorhabditis elegans] ref|NP_492669.1| Y106G6D.6 [Caenorhabditis elegans] 3.0E-54
blast CAA20979 Hypothetical protein Y106G6D.6 [Caenorhabditis elegans] ref|NP_492669.1| Y106G6D.6 [Caenorhabditis elegans] 4.0E-53
blast CAE66841 Hypothetical protein CBG12211 [Caenorhabditis briggsae] 3.0E-51
blast CAE54927 Hypothetical protein Y106G6D.8 [Caenorhabditis elegans] ref|NP_001021706.1| Y106G6D.8 [Caenorhabditis elegans] 6.0E-20
blast CAE54927 Hypothetical protein Y106G6D.8 [Caenorhabditis elegans] ref|NP_001021706.1| Y106G6D.8 [Caenorhabditis elegans] 5.0E-15
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000020361 1 5-23
Sequence
Target Sequence 
>C. ELEGANS:185498_AT
aaggaagcacaattggtactgaaacaaaagaatgtggtaaagaaactgacttttgttata
atggaactgccgatatctccagtttcagcaaatttcaaaaagctgggtgtaatacagtta
tttgtcagtttcacgcaaataaatgtttcgagcaaaatgtttctggacagttgctaactt
tttgctgttgtaatacagatgatttgtgcaatggtggagctgttacggattctggatctc
tattcgatcgtggattatcagttctg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGGAAGCACAATTGGTACTGAAAC 402 161 17 Antisense
GTTATAATGGAACTGCCGATATCTC 694 445 71 Antisense
CTGCCGATATCTCCAGTTTCAGCAA 263 237 83 Antisense
TACAGTTATTTGTCAGTTTCACGCA 597 643 129 Antisense
GTTTCACGCAAATAAATGTTTCGAG 434 449 144 Antisense
AATGTTTCTGGACAGTTGCTAACTT 85 163 172 Antisense
GTTGCTAACTTTTTGCTGTTGTAAT 450 439 186 Antisense
GATGATTTGTGCAATGGTGGAGCTG 326 411 214 Antisense
GGTGGAGCTGTTACGGATTCTGGAT 547 499 229 Antisense
GGATTCTGGATCTCTATTCGATCGT 449 509 243 Antisense
ATTCGATCGTGGATTATCAGTTCTG 384 9 258 Antisense
Sequence Source Affymetrix Proprietary Database