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[185497_at]

Description F43B10.1 /REP_DB=WormBase Gene ID /WP=CE28323 /TR=Q9TZN0 /GB=AAC67400.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 45      4grp_total > 55      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 5.8
(-3)
A 		12.8
(0.9)
A 		16.6
(3)
A 		10
(-0.7)
A 		11
B 9
(-0.4)
A 		13.9
(3)
A 		6.1
(-2.4)
A 		5.2
(-3)
A 		9
C 37.7
(3)
A 		9.1
(-3)
A 		19.7
(-0.8)
A 		24.2
(0.2)
A 		29
avr 17.5
(3) 		11.9
(-3) 		14.1
(-0.6) 		13.1
(-1.7) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 39
(3)
A 		20.1
(-0.3)
A 		30.1
(1.5)
A 		4.5
(-3)
A 		5
(-2.9)
A 		33.2
(2)
A 		35
B 4.3
(-3)
A 		16.9
(-0)
A 		29.7
(3)
A 		5.7
(-2.7)
A 		7.8
(-2.2)
A 		7.6
(-2.2)
A 		25
C 25
(1.6)
A 		31.4
(3)
A 		10.1
(-1.7)
A 		4.1
(-3)
A 		4.5
(-2.9)
A 		10.6
(-1.6)
A 		27
avr 22.8
(2.8) 		22.8
(2.8) 		23.3
(3) 		4.8
(-3) 		5.8
(-2.7) 		17.1
(1) 		19
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 2.1
(-1.7)
A 		2.8
(-0.2)
A 		4.3
(3)
A 		1.5
(-3)
A 		3
B 2.9
(1.7)
A 		3.4
(3)
A 		1.4
(-2.2)
A 		1.1
(-3)
A 		2
C 12.5
(3)
A 		2.6
(-3)
A 		6.9
(-0.4)
A 		4.1
(-2.1)
A 		10
avr 5.8
(3) 		2.9
(-1.8) 		4.2
(0.3) 		2.2
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 7.2
(2.2)
A 		7.2
(2.2)
A 		6.6
(1.7)
A 		1.1
(-3)
A 		1.5
(-2.7)
A 		8.1
(3)
A 		7
B 1.5
(-3)
A 		5.6
(1.3)
A 		7.2
(3)
A 		1.5
(-3)
A 		3.2
(-1.2)
A 		2.8
(-1.6)
A 		6
C 9.3
(2.8)
A 		9.6
(3)
A 		2.6
(-1.8)
A 		0.8
(-3)
A 		1.5
(-2.5)
A 		3.5
(-1.2)
A 		9
avr 6
(1.6) 		7.5
(3) 		5.5
(1.1) 		1.1
(-3) 		2.1
(-2.1) 		4.8
(0.5) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185497_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17536
Sequence Type Exemplar sequence
Representative Public ID F43B10.1 NCBI
Target Description F43B10.1 /REP_DB=WormBase Gene ID /WP=CE28323 /TR=Q9TZN0 /GB=AAC67400.2 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078290
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000034871 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:16659074:16663107:-1 None
NM_078290 NCBI Caenorhabditis elegans F43B10.1 (F43B10.1) mRNA, complete cds. None
SNAP00000034866 ENSEMBL cdna:SNAP chromosome:CEL140:X:16661566:16662736:-1 None
F43B10.1 ENSEMBL cdna:known chromosome:CEL140:X:16660956:16663107:-1 gene:F43B10.1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16661525-16663107(-) 95.16 100.0
Public Domain and Genome References
Gene Title
Ensembl F43B10.1
Entrez Gene 3565023 Entrez gene
SwissProt Q9TZN0 EMBL-EBI
WormBase CE28323 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC67400 Hypothetical protein F43B10.1 [Caenorhabditis elegans] ref|NP_510691.1| F43B10.1 [Caenorhabditis elegans] 1.0E-147
blast AAC67400 Hypothetical protein F43B10.1 [Caenorhabditis elegans] ref|NP_510691.1| F43B10.1 [Caenorhabditis elegans] 3.0E-98
blast AAC67400 Hypothetical protein F43B10.1 [Caenorhabditis elegans] ref|NP_510691.1| F43B10.1 [Caenorhabditis elegans] 5.0E-62
blast CAE69951 Hypothetical protein CBG16340 [Caenorhabditis briggsae] 8.0E-44
blast CAE69951 Hypothetical protein CBG16340 [Caenorhabditis briggsae] 4.0E-43
blast CAE69951 Hypothetical protein CBG16340 [Caenorhabditis briggsae] 5.0E-43
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_510691.1 3 15-34,41-60,75-94
F43B10.1 3 15-34,41-60,75-94
GENEFINDER00000034871 3 15-34,41-60,75-94
Sequence
Target Sequence 
>C. ELEGANS:185497_AT
tagttgttggacgacgtcccctcaccgcctacgaattgaatacaaatgccatttttttct
ggattcatattacaatggcaagacgcgggtttaaacaaaggttgaaagtcaccagagagt
caatcgagaggttctgccatgatttgaaaattgtcaaaatgctcacaagtcccgatagac
cgagctcttctggagcagaaaccgtgtcactgctcagcgaggaagacgacgacaaaatgc
caagctacaaaacgcgtccttttatggaaaaactcgacctgtcgcaccttggaccatctg
acccattacgagacagtgacttgcaacctgctatcacaactccacgcaaaaacttgaact
ttggtgagtcatgcttcttcactcaaacacttttcgcccattttttcaacttctcaatat
ttactctcttgcagatttgcctaggtcgccgcgaatcgagacgacgacatccgctga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAGTTGTTGGACGACGTCCCCTCAC 214 651 215 Antisense
GTCAAAATGCTCACAAGTCCCGATA 128 463 367 Antisense
TCCCGATAGACCGAGCTCTTCTGGA 427 595 384 Antisense
GCAGAAACCGTGTCACTGCTCAGCG 285 313 409 Antisense
ATGCCAAGCTACAAAACGCGTCCTT 366 39 451 Antisense
GACTTGCAACCTGCTATCACAACTC 343 371 532 Antisense
GAGTCATGCTTCTTCACTCAAACAC 533 399 580 Antisense
TCAACTTCTCAATATTTACTCTCTT 302 631 620 Antisense
ACTCTCTTGCAGATTTGCCTAGGTC 399 99 637 Antisense
TGCCTAGGTCGCCGCGAATCGAGAC 335 313 652 Antisense
GAATCGAGACGACGACATCCGCTGA 283 329 667 Antisense
Sequence Source Affymetrix Proprietary Database