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[185496_at]

Description T15B7.11 /REP_DB=WormBase Gene ID /WP=CE13666 /TR=O17029 /GB=AAB69970.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 43      4grp_total > 20      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 9
(-2.7)
A 		33.6
(3)
A 		7.6
(-3)
A 		22.6
(0.5)
A 		26
B 47.5
(3)
A 		39.6
(1.9)
A 		3.4
(-3)
A 		19.9
(-0.8)
A 		44
C 36.2
(-1)
A 		10.7
(-3)
A 		35.8
(-1.1)
A 		88.9
(3)
P 		78
avr 30.9
(0.3) 		28
(-0.4) 		15.6
(-3) 		43.8
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 39.2
(1.9)
A 		9.8
(-2.3)
A 		46.7
(3)
M 		10.2
(-2.2)
A 		4.7
(-3)
A 		21.3
(-0.6)
A 		42
B 28.7
(0.2)
A 		35.5
(1.1)
A 		50.8
(3)
A 		3.3
(-3)
A 		28.2
(0.1)
A 		4.4
(-2.9)
A 		48
C 15.8
(-0.8)
A 		39.6
(3)
A 		29.1
(1.3)
A 		27.3
(1)
A 		20.5
(-0.1)
A 		2.3
(-3)
A 		37
avr 27.9
(0.4) 		28.3
(0.5) 		42.2
(3) 		13.6
(-2.2) 		17.8
(-1.4) 		9.3
(-3) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 3.3
(-1.5)
A 		7.3
(3)
A 		2
(-3)
A 		3.3
(-1.5)
A 		5
B 15.2
(3)
A 		9.8
(0.8)
A 		0.8
(-3)
A 		4.3
(-1.5)
A 		14
C 12
(1.5)
A 		3.1
(-3)
A 		12.5
(1.7)
A 		15
(3)
P 		12
avr 10.2
(3) 		6.7
(-1.1) 		5.1
(-3) 		7.5
(-0.2) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 7.2
(1)
A 		3.5
(-1.6)
A 		10.2
(3)
M 		2.6
(-2.2)
A 		1.4
(-3)
A 		5.2
(-0.4)
A 		9
B 10
(1.8)
A 		11.8
(2.7)
A 		12.3
(3)
A 		0.9
(-3)
A 		11.5
(2.6)
A 		1.6
(-2.6)
A 		11
C 5.9
(-0.3)
A 		12.1
(3)
A 		7.4
(0.5)
A 		5.5
(-0.5)
A 		6.6
(0.1)
A 		0.8
(-3)
A 		11
avr 7.7
(1.2) 		9.1
(2.3) 		10
(3) 		3
(-2.6) 		6.5
(0.2) 		2.5
(-3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185496_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11486
Sequence Type Exemplar sequence
Representative Public ID T15B7.11 NCBI
Target Description T15B7.11 /REP_DB=WormBase Gene ID /WP=CE13666 /TR=O17029 /GB=AAB69970.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072328(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072328 NCBI Caenorhabditis elegans T15B7.11 (T15B7.11) mRNA, complete cds. 11/11 None
GENEFINDER00000035405 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:6818197:6819878:-1 10/11 None
T15B7.11 ENSEMBL cdna:known chromosome:CEL140:V:6818260:6819878:-1 gene:T15B7.11 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6818260-6819879(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T15B7.11
Entrez Gene 188521 Entrez gene
SwissProt O17029 EMBL-EBI
WormBase CE13666 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB69970 Hypothetical protein T15B7.11 [Caenorhabditis elegans] ref|NP_504729.1| T15B7.11 [Caenorhabditis elegans] 0.0
blast CAE71956 Hypothetical protein CBG19025 [Caenorhabditis briggsae] 1.0E-117
blast AAB69965 Hypothetical protein T15B7.12 [Caenorhabditis elegans] ref|NP_504730.1| T15B7.12 [Caenorhabditis elegans] 1.0E-117
blast AAB69965 Hypothetical protein T15B7.12 [Caenorhabditis elegans] ref|NP_504730.1| T15B7.12 [Caenorhabditis elegans] 1.0E-113
blast CAE71956 Hypothetical protein CBG19025 [Caenorhabditis briggsae] 1.0E-113
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_504729.1 7 44-66,73-95,115-137,158-180,212-234,269-291,301-323
T15B7.11 7 44-66,73-95,115-137,158-180,212-234,269-291,301-323
GENEFINDER00000035405 7 44-66,73-95,115-137,158-180,212-234,267-289,299-321
Sequence
Target Sequence 
>C. ELEGANS:185496_AT
agatatgctttacgtgtcacttgtgcagtgtatataactgttttaacagtttcaacactt
atcgttcccgtaaatgaagttaaaaaaaccgacgatggtgaagtatatattgatacttca
gatttttcattggcttatgggtgtttactaatgaaaatagttcttgtttttgttggaata
tgtttcaagcttattccatgcactctaatgctgattctatcaatactactacttcaaaaa
atggacgaggggaaacggagcagtgtaccaattaatagaaatcataaaaagcgagtagac
caattagatcgctcatcgcaactgattcaaacaatattaatcgtttttctaattactgaa
gtgcctcaaggagtattcagcattattggagggattgaagtcattgattatttaaattac
tatcagaatttaacaatttttatgaacgtgctgtcttttttcaacacaaccaccagtttc
ataatctatagctctttgtcagcaaaatttcgaaggatattcgcccaaacattcttaccg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGATATGCTTTACGTGTCACTTGTG 245 65 481 Antisense
CAGTTTCAACACTTATCGTTCCCGT 44 201 527 Antisense
GATACTTCAGATTTTTCATTGGCTT 6 425 592 Antisense
GTTTCAAGCTTATTCCATGCACTCT 678 449 662 Antisense
CATGCACTCTAATGCTGATTCTATC 338 211 677 Antisense
GTAGACCAATTAGATCGCTCATCGC 22 457 775 Antisense
GATCGCTCATCGCAACTGATTCAAA 550 417 787 Antisense
TTATGAACGTGCTGTCTTTTTTCAA 349 681 920 Antisense
AACACAACCACCAGTTTCATAATCT 394 133 943 Antisense
TTCATAATCTATAGCTCTTTGTCAG 170 685 958 Antisense
GATATTCGCCCAAACATTCTTACCG 43 427 996 Antisense
Sequence Source Affymetrix Proprietary Database