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[185493_at] 7TM chemoreceptor, sre family

Description C50E10.5 /REP_DB=WormBase Gene ID /WP=CE19759 /TR=Q9TZJ9 /GB=AAC67436.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 51      4grp_total > 07      6grp_cgc > 60      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 42.6
(-0.9)
A 		12.4
(-3)
A 		91.6
(2.6)
A 		96.8
(3)
A 		84
B 45.7
(1.2)
A 		24.9
(-1.9)
A 		58.1
(3)
A 		17.8
(-3)
A 		40
C 55.2
(3)
A 		39.6
(-2.9)
A 		39.2
(-3)
A 		40.7
(-2.4)
A 		16
avr 47.8
(0.6) 		25.6
(-3) 		63
(3) 		51.8
(1.2) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 63
1 2 3 4 5 6 range
A 62.6
(3)
A 		48.8
(0.6)
A 		61.1
(2.7)
A 		44.8
(-0.1)
A 		40.7
(-0.8)
A 		28.4
(-3)
A 		34
B 22.1
(-2)
A 		37.1
(-0.4)
A 		56.9
(1.8)
A 		67.5
(3)
A 		48.9
(0.9)
A 		13.1
(-3)
A 		54
C 26.4
(3)
A 		12.4
(-0.8)
A 		9.9
(-1.5)
A 		8.4
(-1.9)
A 		4.4
(-3)
A 		12.4
(-0.8)
A 		22
avr 37
(1.6) 		32.8
(0.6) 		42.6
(3) 		40.2
(2.4) 		31.3
(0.2) 		18
(-3) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 15.5
(0.6)
A 		2.7
(-3)
A 		23.9
(3)
A 		14.2
(0.3)
A 		21
B 14.6
(3)
A 		6.1
(-1.7)
A 		13.5
(2.4)
A 		3.8
(-3)
A 		11
C 18.3
(3)
A 		11.4
(-0.6)
A 		13.7
(0.6)
A 		6.9
(-3)
A 		11
avr 16.1
(2.5) 		6.7
(-3) 		17
(3) 		8.3
(-2.1) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 11.5
(-0.4)
A 		17.4
(3)
A 		13.3
(0.7)
A 		11.4
(-0.4)
A 		12.3
(0.1)
A 		6.9
(-3)
A 		11
B 7.7
(-1.9)
A 		12.3
(-0)
A 		13.8
(0.6)
A 		17.9
(2.2)
A 		19.9
(3)
A 		4.9
(-3)
A 		15
C 9.8
(3)
A 		3.8
(-1.3)
A 		2.5
(-2.2)
A 		1.7
(-2.8)
A 		1.4
(-3)
A 		4.1
(-1.1)
A 		8
avr 9.7
(1.5) 		11.2
(3) 		9.9
(1.7) 		10.3
(2.1) 		11.2
(3) 		5.3
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185493_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3185
Sequence Type Exemplar sequence
Representative Public ID C50E10.5 NCBI
Target Description C50E10.5 /REP_DB=WormBase Gene ID /WP=CE19759 /TR=Q9TZJ9 /GB=AAC67436.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064219(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064219 NCBI Caenorhabditis elegans Serpentine Receptor, class E (epsilon) family member (sre-52) (sre-52) mRNA, complete cds. 11/11 None
GENEFINDER00000034850 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:12331600:12337996:1 11/11 None
C50E10.5 ENSEMBL cdna:known chromosome:CEL140:II:12335633:12337996:1 gene:C50E10.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:12335629-12337993(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, sre family
Gene Symbol sre-52
Ensembl C50E10.5
Entrez Gene 183666 Entrez gene
SwissProt Q965H4 EMBL-EBI
WormBase CE38057 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7606 sensory perception of chemical stimulus inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4888 transmembrane receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_496620 Serpentine Receptor, class E (epsilon) family member (sre-52) [Caenorhabditis elegans] gb|AAK73864.2| Serpentine receptor, class e (epsilon) protein 52 [Caenorhabditis elegans] 0.0
blast NP_496620 Serpentine Receptor, class E (epsilon) family member (sre-52) [Caenorhabditis elegans] gb|AAK73864.2| Serpentine receptor, class e (epsilon) protein 52 [Caenorhabditis elegans] 1.0E-147
blast CAE73488 Hypothetical protein CBG20942 [Caenorhabditis briggsae] 1.0E-102
blast NP_496619 Serpentine Receptor, class E (epsilon) family member (sre-54) [Caenorhabditis elegans] gb|AAK73865.2| Serpentine receptor, class e (epsilon) protein 54 [Caenorhabditis elegans] 2.0E-85
blast NP_496617 Serpentine Receptor, class E (epsilon) family member (sre-56) [Caenorhabditis elegans] gb|AAK73867.1| Serpentine receptor, class e (epsilon) protein 56 [Caenorhabditis elegans] 1.0E-78
blast CAE73488 Hypothetical protein CBG20942 [Caenorhabditis briggsae] 3.0E-70
Protein Domains
Database ID Description E-Value
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 3.4E-58
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 2.0E-22
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 5.2E-17
Pfam IPR004151 EMBL-EBI C. elegans Sre G protein-coupled chemoreceptor 7.7E-15
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_496620.2 7 32-54,64-86,125-147,167-189,194-216,254-276,289-311
C50E10.5 7 32-54,64-86,125-147,167-189,194-216,254-276,289-311
GENEFINDER00000034850 11 109-131,138-157,202-224,236-258,278-300,347-369,399-421,434-456,525-547,616-638,653-675
Sequence
Target Sequence 
>C. ELEGANS:185493_AT
aactctacacgttggctgcaaggtttcaggcaaaagagaatgtcagagcttttgagaaaa
atttaattgtattaggaaattcagaatttcaaaaaagtcaaaaaataatttttttttgta
atttgccaacaaagctaacaattcgaatcataattgtcggcttctcccttctgattatag
gaatttgctgtgttatagccataaactacaaatggattccgtcgtatagcacgttattcg
tcttctgttttcaaaatttggtgcatctcaatcccctgatagtctgcccagtgttaatac
tctcagtgagcccgtggagcaaggcaatcccgttcttccggaaagttgattgcattgctc
tgaagagccaacgtccggtttcgttatccgggcagaatgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACTCTACACGTTGGCTGCAAGGTT 86 141 650 Antisense
CGAATCATAATTGTCGGCTTCTCCC 46 253 793 Antisense
GGCTTCTCCCTTCTGATTATAGGAA 110 537 808 Antisense
GGATTCCGTCGTATAGCACGTTATT 472 507 863 Antisense
GCACGTTATTCGTCTTCTGTTTTCA 155 315 878 Antisense
AAAATTTGGTGCATCTCAATCCCCT 635 133 902 Antisense
TCTGCCCAGTGTTAATACTCTCAGT 640 607 932 Antisense
TACTCTCAGTGAGCCCGTGGAGCAA 75 647 947 Antisense
GCAATCCCGTTCTTCCGGAAAGTTG 83 323 973 Antisense
TGAAGAGCCAACGTCCGGTTTCGTT 472 571 1010 Antisense
CGGTTTCGTTATCCGGGCAGAATGT 282 243 1025 Antisense
Sequence Source Affymetrix Proprietary Database