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[185492_at]

Description K02E10.4 /REP_DB=WormBase Gene ID /WP=CE04696 /TR=Q21134 /GB=AAC47070.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 23      6grp_total > 03      4grp_total > 49      6grp_high1_sub > 02      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 981
1 2 3 4 range
A 7.5
(-3)
A 		986.4
(3)
P 		862.4
(2.2)
P 		5.9
(-3)
A 		981
B 12.6
(-3)
A 		952.6
(2.9)
P 		971
(3)
P 		12.4
(-3)
A 		959
C 6.7
(-3)
A 		914.3
(3)
P 		877.8
(2.8)
P 		14.6
(-2.9)
A 		908
avr 8.9
(-3) 		951.1
(3) 		903.7
(2.7) 		11
(-3) 		942

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 521
1 2 3 4 5 6 range
A 473.4
(1.4)
P 		613.9
(3)
P 		308
(-0.6)
P 		481.6
(1.5)
P 		256.2
(-1.2)
P 		97.1
(-3)
A 		517
B 544.2
(2.6)
P 		577
(3)
P 		304
(-0.7)
P 		469.4
(1.5)
P 		347.4
(-0.1)
P 		136
(-3)
P 		441
C 479.9
(2)
P 		553.1
(3)
P 		421.4
(1.3)
P 		426.5
(1.4)
P 		263.7
(-0.8)
P 		92.7
(-3)
P 		460
avr 499.2
(2) 		581.3
(3) 		344.5
(-0) 		459.2
(1.5) 		289.1
(-0.7) 		108.6
(-3) 		473
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 305
1 2 3 4 range
A 2.7
(-3)
A 		214.1
(2.7)
P 		225.5
(3)
P 		0.9
(-3)
A 		225
B 4
(-3)
A 		235.3
(3)
P 		225
(2.7)
P 		2.6
(-3)
A 		233
C 2.2
(-3)
A 		262.9
(2.2)
P 		305.9
(3)
P 		2.5
(-3)
A 		304
avr 3
(-3) 		237.4
(2.6) 		252.1
(3) 		2
(-3) 		250

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 195
1 2 3 4 5 6 range
A 87.3
(-1)
P 		218.3
(3)
P 		67.1
(-1.7)
P 		122.1
(0)
P 		77.3
(-1.3)
P 		23.7
(-3)
A 		195
B 189.3
(2.9)
P 		192.1
(3)
P 		73.8
(-2)
P 		124.3
(0.1)
P 		141.2
(0.8)
P 		50.7
(-3)
P 		141
C 177.9
(3)
P 		168.8
(2.6)
P 		107.2
(0.1)
P 		85.8
(-0.8)
P 		85.3
(-0.8)
P 		31
(-3)
P 		147
avr 151.5
(1.4) 		193.1
(3) 		82.7
(-1.2) 		110.7
(-0.1) 		101.3
(-0.5) 		35.1
(-3) 		158
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185492_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18440
Sequence Type Exemplar sequence
Representative Public ID K02E10.4 NCBI
Target Description K02E10.4 /REP_DB=WormBase Gene ID /WP=CE04696 /TR=Q21134 /GB=AAC47070.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029580(11), NM_001029579(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029580 NCBI Caenorhabditis elegans K02E10.4b (K02E10.4) mRNA, complete cds. 11/11 None
NM_001029579 NCBI Caenorhabditis elegans K02E10.4a (K02E10.4) mRNA, complete cds. 11/11 None
GENEFINDER00000017108 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:2483256:2488209:1 11/11 None
SNAP00000017097 ENSEMBL cdna:SNAP chromosome:CEL140:X:2483764:2485470:1 11/11 None
K02E10.4b ENSEMBL cdna:known chromosome:CEL140:X:2483256:2488260:1 gene:K02E10.4 11/11 None
K02E10.4a ENSEMBL cdna:known chromosome:CEL140:X:2483256:2488209:1 gene:K02E10.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2483255-2485470(+) 99.67 100.0
Public Domain and Genome References
Ensembl K02E10.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAU05564 Hypothetical protein K02E10.4b [Caenorhabditis elegans] ref|NP_001024751.1| K02E10.4b [Caenorhabditis elegans] 0.0
blast AAC47069 Hypothetical protein K02E10.4a [Caenorhabditis elegans] ref|NP_001024750.1| K02E10.4a [Caenorhabditis elegans] 0.0
blast T16520 hypothetical protein K02E10.4 - Caenorhabditis elegans 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024751.1 2 29-46,66-88
NP_001024750.1 2 29-46,66-88
K02E10.4b 2 29-46,66-88
K02E10.4a 2 29-46,66-88
GENEFINDER00000017108 2 29-46,66-88
Sequence
Target Sequence 
>C. ELEGANS:185492_AT
gtaccgtgttaaagccacaactccgctacctgaagaggaactcgaatgcccaaaacaatc
aattgggcttttgagtagtaacggttctagagtcatttgtaattctagaaacccttgtcc
aggaactgatacattctgtttcggagagtacaaaagatcaatttgctgtcagaaatatct
atacgcttctgacattcttgacgatccggcaaccactacgacacaacaaccaaaacgtgg
atttcaaagtatttcaatgtcaatgagacagccgttacctggaaaaattcacgacggtca
atacttgaaaccaaccacgacatcttcttcaacaaccactactacaaccacaacagcgcc
tcctccaattgttgatcaagagttcccacagatagctatcaatagtgttggtgtgagaag
gaaaggtccgattagaccagctcaacgtgttaaaccatccgaagtaggtggaaacgcaat
ggttacaagaacttggataccgagacaatccttcacttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTACCGTGTTAAAGCCACAACTCCG 124 457 651 Antisense
CACAACTCCGCTACCTGAAGAGGAA 86 195 666 Antisense
GTAATTCTAGAAACCCTTGTCCAGG 345 461 749 Antisense
ATATCTATACGCTTCTGACATTCTT 99 21 825 Antisense
TTCTGACATTCTTGACGATCCGGCA 698 693 837 Antisense
GTCAATGAGACAGCCGTTACCTGGA 369 463 909 Antisense
TGAAACCAACCACGACATCTTCTTC 460 571 956 Antisense
CGCCTCCTCCAATTGTTGATCAAGA 623 257 1007 Antisense
AAGAGTTCCCACAGATAGCTATCAA 521 153 1028 Antisense
TCCGATTAGACCAGCTCAACGTGTT 83 595 1077 Antisense
GGATACCGAGACAATCCTTCACTTT 192 511 1145 Antisense
Sequence Source Affymetrix Proprietary Database