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[185491_at]

Description F22E5.13 /REP_DB=WormBase Gene ID /WP=CE09565 /TR=O16710 /GB=AAB66181.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 18      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 179
1 2 3 4 range
A 130.8
(-1.6)
P 		138.2
(-1.3)
P 		96.8
(-3)
A 		245.7
(3)
P 		149
B 107.6
(-3)
A 		129.9
(-2)
A 		113.5
(-2.7)
A 		240.7
(3)
P 		133
C 99.7
(-3)
A 		157.4
(-1)
A 		109.2
(-2.7)
A 		275.3
(3)
P 		176
avr 112.7
(-2.7) 		141.8
(-1.6) 		106.5
(-3) 		253.9
(3) 		147

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 202
1 2 3 4 5 6 range
A 150.4
(2.4)
A 		159.1
(2.8)
P 		123.6
(1.2)
A 		113.5
(0.8)
M 		164.4
(3)
A 		27.6
(-3)
A 		137
B 101.8
(-1.5)
P 		209.7
(2.7)
P 		188.4
(1.9)
A 		63.5
(-3)
A 		216.8
(3)
P 		86.4
(-2.1)
A 		153
C 106.4
(-2.3)
A 		229.2
(3)
M 		118.7
(-1.7)
A 		89.4
(-3)
A 		102.8
(-2.4)
A 		97.2
(-2.7)
A 		140
avr 119.5
(-0.7) 		199.3
(3) 		143.6
(0.4) 		88.8
(-2.1) 		161.3
(1.2) 		70.4
(-3) 		129
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 47.6
(3)
P 		30
(-1.7)
P 		25.3
(-3)
A 		36
(-0.1)
P 		22
B 34.3
(-1.1)
A 		32.1
(-1.6)
A 		26.3
(-3)
A 		51.3
(3)
P 		25
C 33
(-3)
A 		45.3
(2.5)
A 		38.1
(-0.7)
A 		46.4
(3)
P 		13
avr 38.3
(0.4) 		35.8
(-0.6) 		29.9
(-3) 		44.6
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 27.7
(-0.5)
A 		56.6
(3)
P 		26.9
(-0.6)
A 		28.8
(-0.3)
M 		49.6
(2.2)
A 		6.7
(-3)
A 		50
B 35.4
(-1.4)
P 		69.8
(1.5)
P 		45.8
(-0.6)
A 		16.8
(-3)
A 		88.1
(3)
P 		32.2
(-1.7)
A 		71
C 39.4
(-0.5)
A 		69.9
(3)
M 		30.2
(-1.6)
A 		18
(-3)
A 		33.3
(-1.2)
A 		32.6
(-1.3)
A 		52
avr 34.2
(-1.2) 		65.4
(3) 		34.3
(-1.2) 		21.2
(-3) 		57
(1.9) 		23.8
(-2.6) 		44
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185491_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5068
Sequence Type Exemplar sequence
Representative Public ID F22E5.13 NCBI
Target Description F22E5.13 /REP_DB=WormBase Gene ID /WP=CE09565 /TR=O16710 /GB=AAB66181.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061918(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061918 NCBI Caenorhabditis elegans F22E5.13 (F22E5.13) mRNA, complete cds. 9/11 None
F22E5.13 ENSEMBL cdna:known chromosome:CEL140:II:2647695:2649640:-1 gene:F22E5.13 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000023608 1/11 Cross Hyb Matching Probes None
GENEFINDER00000023626 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2647673-2649066(-) 77.97 93.57
Public Domain and Genome References
Gene Title
Ensembl F22E5.13
Entrez Gene 184841 Entrez gene
SwissProt O16710 EMBL-EBI
WormBase CE31794 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494319 F22E5.13 [Caenorhabditis elegans] gb|AAB66181.2| Hypothetical protein F22E5.13 [Caenorhabditis elegans] 1.0E-50
blast AAB37945 Hypothetical protein ZC239.6 [Caenorhabditis elegans] ref|NP_494474.2| ZC239.6 [Caenorhabditis elegans] 6.0E-34
Sequence
Target Sequence 
>C. ELEGANS:185491_AT
taaaaacccgacatcagttgctccgggaagccagattttacggattggtgaaattagtga
gagattgtgagcaagcaattgcaagattggatgtaggctcaggcaggccaagtgagagat
gggatccgttgccagacattatttgcaacagtagatctatttcaaataatgttgctccag
ccgtcgtggagtctgaaataaagactccaaacaacgagaatgacctaccaatactgccgg
agtacaatgctaaccaaaacgttatcaaaaatagcgagaaaatgatgttggaactcaaaa
tcgaaagcttccctacacgcccaaaagatgccaccgtcacaagttacggtagtgttgtca
aattttttattgcttttttttattgtctgaaaacgtcaaatttcaaaatgaaacgccttg
aaaacttctca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAAAAACCCGACATCAGTTGCTCCG 70 639 65 Antisense
GCTCCGGGAAGCCAGATTTTACGGA 331 279 84 Antisense
GTGAGAGATGGGATCCGTTGCCAGA 474 483 176 Antisense
GGATCCGTTGCCAGACATTATTTGC 332 513 186 Antisense
GCTCCAGCCGTCGTGGAGTCTGAAA 67 299 238 Antisense
GAGAATGACCTACCAATACTGCCGG 537 389 280 Antisense
GGAGTACAATGCTAACCAAAACGTT 595 515 303 Antisense
CAAAATCGAAAGCTTCCCTACACGC 548 189 360 Antisense
AAAAGATGCCACCGTCACAAGTTAC 688 131 387 Antisense
TTATTGCTTTTTTTTATTGTCTGAA 346 679 431 Antisense
AATGAAACGCCTTGAAAACTTCTCA 500 159 471 Antisense
Sequence Source Affymetrix Proprietary Database