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[185490_at]

Description C27A12.4 /REP_DB=WormBase Gene ID /WP=CE08413 /TR=O01959 /GB=AAB93642.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 55      4grp_total > 32      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 118
1 2 3 4 range
A 80.9
(-3)
A 		126.7
(-0)
A 		174
(3)
A 		123.8
(-0.2)
A 		93
B 116.1
(2.7)
A 		56.2
(-3)
A 		100.8
(1.3)
A 		118.8
(3)
A 		63
C 69.6
(-3)
A 		132.2
(2.9)
A 		132.9
(3)
A 		98.2
(-0.3)
A 		63
avr 88.9
(-3) 		105
(-0.9) 		135.9
(3) 		113.6
(0.2) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 104
1 2 3 4 5 6 range
A 116.9
(2.9)
A 		95
(1.5)
A 		74.7
(0.1)
A 		98.1
(1.7)
A 		26.8
(-3)
A 		118.1
(3)
A 		91
B 55.3
(-2.7)
A 		62.3
(-2.1)
A 		119.8
(3)
A 		70.3
(-1.3)
A 		89.4
(0.3)
A 		51.5
(-3)
A 		68
C 68
(-3)
A 		100
(0.1)
A 		91.8
(-0.7)
A 		103.4
(0.4)
A 		84.8
(-1.4)
A 		130.3
(3)
A 		62
avr 80.1
(-0.6) 		85.8
(0.4) 		95.4
(2.2) 		90.6
(1.3) 		67
(-3) 		100
(3) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 29.5
(-0.5)
A 		27.5
(-0.9)
A 		45.5
(3)
A 		18.1
(-3)
A 		27
B 37
(3)
A 		13.9
(-3)
A 		23.4
(-0.5)
A 		25.3
(-0)
A 		23
C 23
(-1.7)
A 		38
(1.3)
A 		46.3
(3)
A 		16.6
(-3)
A 		30
avr 29.8
(0.2) 		26.5
(-0.9) 		38.4
(3) 		20
(-3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 36
1 2 3 4 5 6 range
A 21.6
(0.2)
A 		33.8
(3)
A 		16.3
(-1.1)
A 		24.9
(0.9)
A 		8.1
(-3)
A 		28.8
(1.8)
A 		26
B 19.2
(-2.8)
A 		20.7
(-2.3)
A 		29.1
(0.6)
A 		18.6
(-3)
A 		36.3
(3)
A 		19.2
(-2.8)
A 		18
C 25.2
(-1.8)
A 		30.5
(-0.4)
A 		23.4
(-2.3)
A 		20.8
(-3)
A 		27.4
(-1.3)
A 		43.6
(3)
A 		23
avr 22
(-2.6) 		28.3
(1.5) 		22.9
(-2) 		21.4
(-3) 		23.9
(-1.4) 		30.5
(3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185490_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1857
Sequence Type Exemplar sequence
Representative Public ID C27A12.4 NCBI
Target Description C27A12.4 /REP_DB=WormBase Gene ID /WP=CE08413 /TR=O01959 /GB=AAB93642.1 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059342(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059342 NCBI Caenorhabditis elegans C27A12.4 (C27A12.4) mRNA, complete cds. 11/11 None
SNAP00000016766 ENSEMBL cdna:SNAP chromosome:CEL140:I:6044698:6045903:1 10/11 None
C27A12.4 ENSEMBL cdna:known chromosome:CEL140:I:6044732:6045616:1 gene:C27A12.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000016784 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6044731-6045616(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C27A12.4
Entrez Gene 182954 Entrez gene
SwissProt O01959 EMBL-EBI
WormBase CE08413 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB93642 Hypothetical protein C27A12.4 [Caenorhabditis elegans] ref|NP_491743.1| C27A12.4 [Caenorhabditis elegans] 1.0E-168
blast AAB93642 Hypothetical protein C27A12.4 [Caenorhabditis elegans] ref|NP_491743.1| C27A12.4 [Caenorhabditis elegans] 1.0E-152
Sequence
Target Sequence 
>C. ELEGANS:185490_AT
gtagagctcaacagttcttccacatcagctcttccaattaaagaagaggttactacaagg
agccctgcaccaaatatgggtttttgcgaagtacgccagctcccaaaagactccagaggg
cctcagagagatggctcctcatctcctgatgttcagttcatcaagactgtgactatgtca
cggttagagaatgttgttcctaccagctcacgtggaaaggcgccagaagattcatctgca
ccagcacgtctaggattcctctccgatcgtgcggtctccgggtcatcaatcccagccgtc
gaggaaagatctggagaaggcagcttcgactttacaggtccttccactcctcgcttggcc
cagccagcttttgggaacttttttgggaatagggcgagttcttcgtctttcggtgcacca
ttgtcaactctagctgtggacaagctgattccggaacctcatctctccggaagcaaagcg
gtcccagaccatcgtttcgatttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTAGAGCTCAACAGTTCTTCCACAT 262 457 325 Antisense
TTCCACATCAGCTCTTCCAATTAAA 381 697 342 Antisense
TTTTTGCGAAGTACGCCAGCTCCCA 9 675 405 Antisense
ATCTGCACCAGCACGTCTAGGATTC 449 33 558 Antisense
TCATCAATCCCAGCCGTCGAGGAAA 485 611 607 Antisense
AGGCAGCTTCGACTTTACAGGTCCT 239 55 642 Antisense
CTTGGCCCAGCCAGCTTTTGGGAAC 76 219 678 Antisense
AATAGGGCGAGTTCTTCGTCTTTCG 490 171 712 Antisense
CTTTCGGTGCACCATTGTCAACTCT 244 221 731 Antisense
ACCTCATCTCTCCGGAAGCAAAGCG 708 87 780 Antisense
GTCCCAGACCATCGTTTCGATTTCA 638 475 805 Antisense
Sequence Source Affymetrix Proprietary Database