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[185488_at]

Description Y39B6B.EE /REP_DB=WormBase Gene ID /WP=CE21678 /TR=Q9NES9 /GB=CAB60936.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 47      6grp_high1_10_10 > 73      4grp_highest_8_8 > 23      4grp_high_8_8 > 05      6grp_highest_nonorm > 63      6grp_total > 74      4grp_total > 03      6grp_high1_sub > 03_04      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1746
1 2 3 4 range
A 463.3
(-2.6)
P 		410.9
(-2.8)
P 		365.7
(-3)
P 		1759.1
(3)
P 		1393
B 529.4
(-2.1)
P 		306.2
(-3)
P 		408.1
(-2.6)
P 		1809.7
(3)
P 		1504
C 635.4
(-2)
P 		393.3
(-2.9)
P 		354.5
(-3)
P 		2051.7
(3)
P 		1697
avr 542.7
(-2.3) 		370.1
(-3) 		376.1
(-3) 		1873.5
(3) 		1503

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 346
1 2 3 4 5 6 range
A 533
(-2.9)
P 		617.2
(-1.3)
P 		837.7
(3)
P 		745.9
(1.2)
P 		529.9
(-3)
P 		632.2
(-1)
P 		308
B 537.6
(-3)
P 		547.2
(-2.8)
P 		785.9
(3)
P 		624.8
(-0.9)
P 		730.7
(1.7)
P 		667.1
(0.1)
P 		248
C 626.1
(-0.4)
P 		492
(-3)
P 		629
(-0.3)
P 		799.9
(3)
P 		711.5
(1.3)
P 		787.7
(2.8)
P 		308
avr 565.6
(-2.6) 		552.1
(-3) 		750.9
(3) 		723.5
(2.2) 		657.4
(0.2) 		695.7
(1.3) 		199
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 310
1 2 3 4 range
A 168.7
(-0.2)
P 		89.2
(-3)
P 		95.6
(-2.8)
P 		257.5
(3)
P 		168
B 168.8
(-1.2)
P 		75.6
(-3)
P 		94.6
(-2.6)
P 		385.7
(3)
P 		310
C 210.3
(-0.5)
P 		113.1
(-3)
P 		123.6
(-2.7)
P 		346
(3)
P 		233
avr 182.6
(-0.7) 		92.6
(-3) 		104.6
(-2.7) 		329.7
(3) 		237

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 199
1 2 3 4 5 6 range
A 98.2
(-3)
P 		219.5
(3)
P 		182.4
(1.2)
P 		189.2
(1.5)
P 		159.9
(0.1)
P 		153.9
(-0.2)
P 		121
B 187.1
(-2)
P 		182.1
(-2.2)
P 		190.8
(-1.8)
P 		165.5
(-3)
P 		296.9
(3)
P 		248.8
(0.8)
P 		131
C 232.1
(1.3)
P 		150.1
(-3)
P 		160.1
(-2.5)
P 		160.9
(-2.4)
P 		230.2
(1.2)
P 		263.7
(3)
P 		114
avr 172.5
(-2.9) 		183.9
(-1.7) 		177.8
(-2.4) 		171.9
(-3) 		229
(3) 		222.1
(2.3) 		57
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185488_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19423
Sequence Type Exemplar sequence
Representative Public ID Y39B6B.EE NCBI
Target Description Y39B6B.EE /REP_DB=WormBase Gene ID /WP=CE21678 /TR=Q9NES9 /GB=CAB60936.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171606(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171606 NCBI Caenorhabditis elegans Y39B6A.3 (Y39B6A.3) mRNA, complete cds. 11/11 None
GENEFINDER00000030725 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:19191913:19192537:-1 11/11 None
Y39B6A.3 ENSEMBL cdna:known chromosome:CEL140:V:19191889:19192537:-1 gene:Y39B6A.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000030556 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:19191912-19192537(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y39B6A.3
Entrez Gene 180262 Entrez gene
SwissProt Q9NES9 EMBL-EBI
WormBase CE21678 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.2900.1.S1_S_AT similar to HESB like domain containing 2 cfa
DROSOPHILA_2:1640339_AT dm
DROSGENOME1:145146_AT dm
U133_X3P:G13569910_3P_S_AT similar to hypothetical protein hs
MU19KSUBB:TC34399_I_AT PREDICTED: similar to zinc finger protein 307; SCAN-KRAB-zinc finger gene 1 [Mus musculus], mRNA sequence mm
Protein Similarities
Method ID Description E-Value
blast CAC51075 Hypothetical protein Y39B6A.3 [Caenorhabditis elegans] ref|NP_741696.1| Y39B6A.3 [Caenorhabditis elegans] 1.0E-67
blast CAE73141 Hypothetical protein CBG20529 [Caenorhabditis briggsae] 7.0E-63
blast XP_798918 PREDICTED: similar to CG8198-PA [Strongylocentrotus purpuratus] 2.0E-40
Protein Domains
Database ID Description E-Value
Pfam IPR000361 EMBL-EBI Protein of unknown function, HesB/YadR/YfhF 1.5E-44
Sequence
Target Sequence 
>C. ELEGANS:185488_AT
gtcaaaattcggtggagcaactgcaaaagtcataaaaggcgcgctaaaagtccgacaaac
gagagcggctctcacacttaccaacgaagccgtcagcagaatacgcgtgttattggctca
acagaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCAAAATTCGGTGGAGCAACTGCA 224 461 15 Antisense
TCGGTGGAGCAACTGCAAAAGTCAT 489 603 23 Antisense
GCAAAAGTCATAAAAGGCGCGCTAA 188 319 37 Antisense
AGGCGCGCTAAAAGTCCGACAAACG 145 49 51 Antisense
AGTCCGACAAACGAGAGCGGCTCTC 358 11 63 Antisense
AACGAGAGCGGCTCTCACACTTACC 633 143 72 Antisense
GGCTCTCACACTTACCAACGAAGCC 539 539 81 Antisense
CACTTACCAACGAAGCCGTCAGCAG 316 197 89 Antisense
GAAGCCGTCAGCAGAATACGCGTGT 547 343 100 Antisense
AGAATACGCGTGTTATTGGCTCAAC 265 75 112 Antisense
ACGCGTGTTATTGGCTCAACAGAAT 184 91 117 Antisense
Sequence Source Affymetrix Proprietary Database