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[185487_s_at]

Description K09C4.10 /REP_DB=WormBase Gene ID /WP=CE04738 /TR=Q21380 /GB=AAA83622.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 14      4grp_total > 47      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 148
1 2 3 4 range
A 182.9
(3)
P 		75.1
(-3)
A 		118.8
(-0.6)
A 		82.9
(-2.6)
A 		108
B 185.1
(3)
P 		36.9
(-3)
A 		94.6
(-0.7)
A 		105.7
(-0.2)
A 		148
C 162.5
(3)
P 		89
(-2.1)
A 		76.6
(-3)
A 		113.5
(-0.4)
A 		86
avr 176.8
(3) 		67
(-3) 		96.7
(-1.4) 		100.7
(-1.2) 		110

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 89
1 2 3 4 5 6 range
A 140
(0)
A 		167.7
(3)
P 		112.9
(-2.9)
P 		112.3
(-3)
P 		115.2
(-2.7)
A 		118.6
(-2.3)
P 		55
B 132.8
(1.1)
P 		131.3
(0.9)
P 		123.5
(0.1)
P 		152.2
(3)
P 		141
(1.9)
A 		91.9
(-3)
A 		60
C 160.7
(3)
P 		112.1
(-0.6)
A 		137.6
(1.3)
M 		122.2
(0.2)
A 		79.2
(-3)
A 		112.7
(-0.5)
P 		82
avr 144.5
(3) 		137
(1.8) 		124.7
(-0.2) 		128.9
(0.5) 		111.8
(-2.3) 		107.7
(-3) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 58
1 2 3 4 range
A 66.6
(3)
P 		16.3
(-2.5)
A 		31.1
(-0.9)
A 		12.1
(-3)
A 		55
B 59
(3)
P 		9.1
(-3)
A 		21.9
(-1.5)
A 		22.5
(-1.4)
A 		50
C 53.8
(3)
P 		25.6
(-1.9)
A 		26.7
(-1.7)
A 		19.1
(-3)
A 		35
avr 59.8
(3) 		17
(-3) 		26.6
(-1.7) 		17.9
(-2.9) 		43

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 35
1 2 3 4 5 6 range
A 25.8
(-2.8)
A 		59.6
(3)
P 		24.6
(-3)
P 		28.5
(-2.3)
P 		34.8
(-1.3)
A 		28.9
(-2.3)
P 		35
B 46.2
(0.6)
P 		43.7
(0)
P 		30
(-3)
P 		40.3
(-0.7)
P 		57.3
(3)
A 		34.3
(-2.1)
A 		27
C 59.6
(3)
P 		34.2
(-1.4)
A 		35
(-1.2)
M 		24.6
(-3)
A 		25.6
(-2.8)
A 		37.7
(-0.8)
P 		35
avr 43.9
(2.3) 		45.8
(3) 		29.9
(-3) 		31.1
(-2.5) 		39.2
(0.5) 		33.6
(-1.6) 		16
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 185487_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18317
Sequence Type Exemplar sequence
Representative Public ID K09C4.10 NCBI
Target Description K09C4.10 /REP_DB=WormBase Gene ID /WP=CE04738 /TR=Q21380 /GB=AAA83622.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076163(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076163 NCBI Caenorhabditis elegans K09C4.10 (K09C4.10) mRNA, complete cds. 11/11 None
SNAP00000004458 ENSEMBL cdna:SNAP chromosome:CEL140:X:3276196:3280188:-1 11/11 None
GENEFINDER00000004468 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3276196:3280188:-1 11/11 None
K09C4.10 ENSEMBL cdna:known chromosome:CEL140:X:3276042:3280188:-1 gene:K09C4.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3276196-3280189(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K09C4.10
Entrez Gene 180620 Entrez gene
SwissProt Q21380 EMBL-EBI
WormBase CE04738 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA83622 Hypothetical protein K09C4.10 [Caenorhabditis elegans] ref|NP_508564.1| K09C4.10 [Caenorhabditis elegans] 0.0
blast CAE68405 Hypothetical protein CBG14180 [Caenorhabditis briggsae] 1.0E-40
Sequence
Target Sequence 
>C. ELEGANS:185487_S_AT
tacccaactctgttttttgacaccgaattctttgacgctaggaaggtgaacttagcaaaa
ccaactcctgaatttgtggaacgcgcgtgcaatgcagctttacatgacatgttccgtcgc
ctgaagtatcttgccgacaagaaagctaatggaggacttcgcaatgttgagcacggtcgt
agaccactcatccagaagcggctccaaaagttccagaatgtttatgttttccgcttgaga
gttgccaaagcaatgctttatattttggataatgatgtggctgctgagtcgactaacatc
cgcgagaaaaacgttatcaaagatttgctattgtatattggcgagcctgttgattccaat
gccgacacactgaaaggaagaaaattggatagaattgccgagcataccagatttgctgat
aacaatgagtcagacttgataactcgtggcctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TACCCAACTCTGTTTTTTGACACCG 558 649 2503 Antisense
GACACCGAATTCTTTGACGCTAGGA 568 365 2521 Antisense
GAACGCGCGTGCAATGCAGCTTTAC 48 347 2581 Antisense
TCCGTCGCCTGAAGTATCTTGCCGA 2 595 2615 Antisense
GAGGACTTCGCAATGTTGAGCACGG 308 405 2654 Antisense
TGAGCACGGTCGTAGACCACTCATC 264 569 2670 Antisense
ACTCATCCAGAAGCGGCTCCAAAAG 688 99 2688 Antisense
TATGTTTTCCGCTTGAGAGTTGCCA 381 655 2725 Antisense
GATGTGGCTGCTGAGTCGACTAACA 139 407 2776 Antisense
GGCGAGCCTGTTGATTCCAATGCCG 639 539 2842 Antisense
GTCAGACTTGATAACTCGTGGCCTT 160 467 2931 Antisense
Sequence Source Affymetrix Proprietary Database