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[185486_at]

Description C24H12.9 /REP_DB=WormBase Gene ID /WP=CE08363 /TR=O17161 /GB=AAB71205.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 53      4grp_total > 11      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 2.8
(-3)
A 		4.6
(-2.5)
A 		3.7
(-2.7)
A 		22.8
(3)
A 		20
B 9.3
(3)
A 		5.6
(0.3)
A 		1.2
(-3)
A 		6
(0.6)
A 		8
C 1.2
(-3)
A 		3.9
(-2.4)
A 		2.5
(-2.7)
A 		27.5
(3)
A 		26
avr 4.4
(-2.3) 		4.7
(-2.2) 		2.5
(-3) 		18.8
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 2.1
(3)
A 		1.6
(0.7)
A 		0.8
(-3)
A 		1.3
(-0.7)
A 		1.8
(1.6)
A 		1.8
(1.6)
A 		1
B 1.7
(-2.9)
A 		2.9
(-2.6)
A 		20.2
(3)
A 		1.5
(-3)
A 		14.5
(1.2)
A 		6.6
(-1.4)
A 		19
C 1.2
(-3)
A 		4.3
(3)
A 		3.2
(0.9)
A 		2.1
(-1.3)
A 		2.4
(-0.7)
A 		2.5
(-0.5)
A 		3
avr 1.7
(-2.9) 		2.9
(-1.8) 		8.1
(3) 		1.6
(-3) 		6.2
(1.2) 		3.6
(-1.2) 		7
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 1
(-3)
A 		1
(-3)
A 		1
(-3)
A 		3.3
(3)
A 		2
B 3
(3)
A 		1.4
(-0.6)
A 		0.3
(-3)
A 		1.3
(-0.8)
A 		3
C 0.4
(-3)
A 		1.1
(-2)
A 		0.9
(-2.3)
A 		4.6
(3)
A 		4
avr 1.5
(-1) 		1.2
(-1.8) 		0.7
(-3) 		3.1
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 0.4
(0)
A 		0.6
(3)
A 		0.2
(-3)
A 		0.3
(-1.5)
A 		0.6
(3)
A 		0.4
(0)
A 		0
B 0.6
(-2.8)
A 		1
(-2.3)
A 		4.9
(1.9)
A 		0.4
(-3)
A 		5.9
(3)
A 		2.4
(-0.8)
A 		6
C 0.4
(-3)
A 		1.3
(3)
A 		0.8
(-0.3)
A 		0.4
(-3)
A 		0.8
(-0.3)
A 		0.8
(-0.3)
A 		1
avr 0.5
(-2.7) 		1
(-1.2) 		2
(1.8) 		0.4
(-3) 		2.4
(3) 		1.2
(-0.6) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185486_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4302
Sequence Type Exemplar sequence
Representative Public ID C24H12.9 NCBI
Target Description C24H12.9 /REP_DB=WormBase Gene ID /WP=CE08363 /TR=O17161 /GB=AAB71205.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061331(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061331 NCBI Caenorhabditis elegans C24H12.9 (C24H12.9) mRNA, complete cds. 11/11 None
C24H12.9 ENSEMBL cdna:known chromosome:CEL140:II:423623:424838:-1 gene:C24H12.9 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000023828 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:423622-424862(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C24H12.9
Entrez Gene 182871 Entrez gene
SwissProt O17161 EMBL-EBI
WormBase CE34707 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB71205 Hypothetical protein C24H12.9 [Caenorhabditis elegans] ref|NP_493732.2| C24H12.9 [Caenorhabditis elegans] 6.0E-76
blast AAG23386 Hypothetical protein Y73E7A.5 [Caenorhabditis elegans] ref|NP_490869.1| Y73E7A.5 [Caenorhabditis elegans] 1.0E-50
blast NP_493753 T27A1.2 [Caenorhabditis elegans] gb|AAB71043.2| Hypothetical protein T27A1.2 [Caenorhabditis elegans] 3.0E-41
Sequence
Target Sequence 
>C. ELEGANS:185486_AT
atttcgatccacgttgagtcattcattatttcggaagtgccattttttcaaacttcttgg
agatgattcgtggattagcacagaagatatggattttatattaaatcactttgacttaaa
atatggtttcttgactcgttgtttacagaaacgggagttcaaccggaaactgtggctcaa
tattccccgattggatttcaatagaaacccagagttaacattaaacgatttgaaaatgat
gaacttcgaaaagatccgattatttgattgttcaatcccgacgatacagctcaacgagta
catttattactggttagccggcaatttgccgaagttacgaagatttcaattgaactactg
gtggaatcagtggactgatgatttattgagtggtttaccgcatttggaatggaatccaaa
acaccgagcaagaatctactgtgatgatctcgaagaagtggattgttcaaaaggacgaga
tatcgagagaagtgatggtctactcgcaactattttaatcgaacccaatgcaatgtactt
tctcgtatgtcatgataga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTCGATCCACGTTGAGTCATTCA 437 17 141 Antisense
TTCGGAAGTGCCATTTTTTCAAACT 366 693 170 Antisense
ATGGTTTCTTGACTCGTTGTTTACA 345 51 263 Antisense
GGAAACTGTGGCTCAATATTCCCCG 644 525 305 Antisense
GATTGTTCAATCCCGACGATACAGC 123 435 406 Antisense
ATCCCGACGATACAGCTCAACGAGT 166 39 415 Antisense
ATTACTGGTTAGCCGGCAATTTGCC 392 13 446 Antisense
GAGTGGTTTACCGCATTTGGAATGG 576 401 528 Antisense
GAATCTACTGTGATGATCTCGAAGA 181 329 572 Antisense
AACCCAATGCAATGTACTTTCTCGT 481 143 662 Antisense
GTACTTTCTCGTATGTCATGATAGA 702 459 675 Antisense
Sequence Source Affymetrix Proprietary Database