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[185485_at]

Description H32C10.2 /REP_DB=WormBase Gene ID /WP=CE21004 /TR=Q9TYQ5 /GB=AAD12800.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 50      6grp_high1_10_10 > 06      4grp_highest_8_8 > 32      4grp_high_8_8 > 51      6grp_highest_nonorm > 30      6grp_total > 06      4grp_total > 60      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 876
1 2 3 4 range
A 1197.8
(3)
P 		1065.2
(2.1)
P 		1056.9
(2)
P 		323.6
(-3)
P 		874
B 1020.7
(2.4)
P 		1094.8
(3)
P 		1021.8
(2.4)
P 		324.8
(-3)
P 		770
C 1199.3
(3)
P 		1104.5
(2.3)
P 		996.5
(1.6)
P 		327.4
(-3)
P 		872
avr 1139.3
(3) 		1088.2
(2.6) 		1025.1
(2.2) 		325.3
(-3) 		814

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1074
1 2 3 4 5 6 range
A 1335.2
(3)
P 		984.2
(0.5)
P 		805.3
(-0.7)
P 		638.2
(-1.9)
P 		569
(-2.4)
P 		476.2
(-3)
P 		859
B 1315.6
(3)
P 		969.9
(0.4)
P 		1023.1
(0.8)
P 		680.8
(-1.9)
P 		593.2
(-2.5)
P 		532
(-3)
P 		784
C 1521.5
(3)
P 		1059.7
(0.4)
P 		836.8
(-0.8)
P 		712.9
(-1.5)
P 		473.5
(-2.9)
P 		447.3
(-3)
P 		1074
avr 1390.8
(3) 		1004.6
(0.4) 		888.4
(-0.3) 		677.3
(-1.7) 		545.2
(-2.6) 		485.2
(-3) 		906
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 389
1 2 3 4 range
A 436.1
(3)
P 		231.2
(-0.2)
P 		276.3
(0.5)
P 		47.4
(-3)
P 		389
B 325.5
(3)
P 		270.4
(1.7)
P 		236.8
(0.9)
P 		69.2
(-3)
P 		256
C 397
(3)
P 		317.5
(1.6)
P 		347.3
(2.1)
P 		55.2
(-3)
P 		342
avr 386.2
(3) 		273
(0.9) 		286.8
(1.2) 		57.3
(-3) 		329

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 448
1 2 3 4 5 6 range
A 246.1
(0.3)
P 		350
(3)
P 		175.4
(-1.5)
P 		161.9
(-1.8)
P 		171.7
(-1.6)
P 		115.9
(-3)
P 		234
B 457.8
(3)
P 		322.8
(0.1)
P 		248.4
(-1.5)
P 		180.3
(-3)
P 		241
(-1.7)
P 		198.4
(-2.6)
P 		278
C 563.9
(3)
P 		323.3
(-0.4)
P 		213
(-2)
P 		143.4
(-3)
P 		153.2
(-2.9)
P 		149.7
(-2.9)
P 		421
avr 422.6
(3) 		332
(1) 		212.3
(-1.7) 		161.9
(-2.8) 		188.6
(-2.2) 		154.7
(-3) 		268
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 185485_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10569
Sequence Type Exemplar sequence
Representative Public ID H32C10.2 NCBI
Target Description H32C10.2 /REP_DB=WormBase Gene ID /WP=CE21004 /TR=Q9TYQ5 /GB=AAD12800.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068489(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068489 NCBI Caenorhabditis elegans H32C10.2 (H32C10.2) mRNA, complete cds. 11/11 None
SNAP00000008637 ENSEMBL cdna:SNAP chromosome:CEL140:IV:5930638:5933104:1 11/11 None
GENEFINDER00000008645 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5930638:5933104:1 11/11 None
H32C10.2 ENSEMBL cdna:known chromosome:CEL140:IV:5930629:5933249:1 gene:H32C10.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5930643-5933110(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl H32C10.2
Entrez Gene 177361 Entrez gene
SwissProt Q9TYQ5 EMBL-EBI
WormBase CE21004 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD12800 Hypothetical protein H32C10.2 [Caenorhabditis elegans] ref|NP_500890.1| H32C10.2 [Caenorhabditis elegans] 1.0E-116
blast AAD12800 Hypothetical protein H32C10.2 [Caenorhabditis elegans] ref|NP_500890.1| H32C10.2 [Caenorhabditis elegans] 1.0E-109
blast CAE64686 Hypothetical protein CBG09464 [Caenorhabditis briggsae] 1.0E-102
blast CAE64686 Hypothetical protein CBG09464 [Caenorhabditis briggsae] 8.0E-96
Sequence
Target Sequence 
>C. ELEGANS:185485_AT
tcaatcaaaaacacgctcaaccacttccatctccacttcattctcctgttaaaagtgtta
ccggatcttcgaaaaatcagtcaccgaaaatggcaccagttcgttcgaattctcgtggat
cttctgcatcttccgaagaagacattggaacccgttcattctcgatttcagtgctcaaag
attccggaacaaaagtggaaattatgctgaaagcacatgggctcagaaagaagaagggat
ttattaattctctagtcactgttttcaaaaagcccagccaaccatctcgcttgttgtcga
atggaaaattcacagaatttgtgctcaccgagcatgctctccgattccttctcgaagtga
aaactgacaaaaagaagaagaagggaaatggaaatcgattggatactttcctgtgcgaag
tcaagagatttccgagtgatgttaacccagatagtgctgaatttgaggtcctcgagccag
cctccggagaagccttcatccttctcacactgataaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAATCAAAAACACGCTCAACCACT 534 633 155 Antisense
CTCCACTTCATTCTCCTGTTAAAAG 647 235 185 Antisense
AAATGGCACCAGTTCGTTCGAATTC 256 119 242 Antisense
GTTCGAATTCTCGTGGATCTTCTGC 510 441 257 Antisense
GTTCATTCTCGATTTCAGTGCTCAA 105 445 308 Antisense
TTTCAAAAAGCCCAGCCAACCATCT 607 665 417 Antisense
CCAACCATCTCGCTTGTTGTCGAAT 166 277 432 Antisense
CTCTCCGATTCCTTCTCGAAGTGAA 430 231 491 Antisense
ATCGATTGGATACTTTCCTGTGCGA 456 35 548 Antisense
TAGTGCTGAATTTGAGGTCCTCGAG 101 655 606 Antisense
CTTCATCCTTCTCACACTGATAAAG 283 221 648 Antisense
Sequence Source Affymetrix Proprietary Database